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@loosolab

Looso bioinformatics lab

Group of bioinformatics at the Max Planck Institute for Heart and Lung Research

Popular repositories Loading

  1. TOBIAS TOBIAS Public

    Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

    Python 240 45

  2. scanpro scanpro Public

    A modular tool for proportion analysis in single-cell sequencing data

    Jupyter Notebook 25 2

  3. TF-COMB TF-COMB Public

    Transcription Factor Co-Occurrence using Market Basket analysis

    Python 17 2

  4. UROPA UROPA Public

    Universal RObust Peak Annotator

    Python 16 7

  5. cardiac-progenitors cardiac-progenitors Public

    Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement

    R 11 4

  6. SC-Framework SC-Framework Public

    A framework for single cell analysis

    HTML 11 3

Repositories

Showing 10 of 34 repositories
  • TOBIAS Public

    Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

    loosolab/TOBIAS’s past year of commit activity
    Python 240 MIT 45 7 0 Updated Mar 17, 2026
  • loosolab/FRED_whitelists’s past year of commit activity
    Python 0 0 0 0 Updated Mar 16, 2026
  • UROPA_dev Public Forked from loosolab/UROPA

    Universal RObust Peak Annotator

    loosolab/UROPA_dev’s past year of commit activity
    Python 0 MIT 7 0 0 Updated Mar 5, 2026
  • FRED Public
    loosolab/FRED’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 2, 2026
  • SC-Framework Public

    A framework for single cell analysis

    loosolab/SC-Framework’s past year of commit activity
    HTML 11 MIT 3 0 0 Updated Mar 2, 2026
  • loosolab/FRED_standalone’s past year of commit activity
    HTML 0 0 0 0 Updated Feb 26, 2026
  • scanpro Public

    A modular tool for proportion analysis in single-cell sequencing data

    loosolab/scanpro’s past year of commit activity
    Jupyter Notebook 25 MIT 2 1 0 Updated Feb 26, 2026
  • PILOT_scframework Public Forked from CostaLab/PILOT

    Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)

    loosolab/PILOT_scframework’s past year of commit activity
    Python 1 MIT 7 0 0 Updated Feb 22, 2026
  • loosolab/Code_Tarasco_et_al_2025_danioheart’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 20, 2026
  • PEAKQC Public

    PEAK-QC: Periodicity Evaluation in ATAC-seq as Key aspect in Quality Control

    loosolab/PEAKQC’s past year of commit activity
    Jupyter Notebook 2 MIT 0 1 0 Updated Feb 19, 2026

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