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Pull requests: merenlab/anvio

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Pull requests list

Workflow fixies
#2736 opened Jul 2, 2026 by FlorianTrigodet Contributor Loading…
Accept numpy integers in external gene calls
#2731 opened Jun 23, 2026 by Kekananen Contributor Loading…
1
Preserve gene caller ids in exported subgraphs
#2728 opened Jun 17, 2026 by meren Member Loading…
Add anvi-export-genome-specific-trna-modifications
#2719 opened Jun 8, 2026 by tucker4 Contributor Loading…
1
@semiller10 @tucker4
Support MUSCLE 5 in the MUSCLE driver
#2718 opened Jun 8, 2026 by bcoltman Contributor Loading…
2
Enable metabolism framework tests
#2713 opened Jun 7, 2026 by ulgens Collaborator • Draft
6
Dynamic viz params
#2695 opened May 31, 2026 by TianyiChang Loading…
@ahenoch
10
Lazy snv access
#2691 opened May 28, 2026 by FlorianTrigodet Contributor Loading…
@FlorianTrigodet
3
Port anvi'o to Python 3.13
#2681 opened May 24, 2026 by bcoltman Contributor • Draft
@meren
17
anvi-report-indels: track mobile indels hackathon 2026 ideas, code, and plans related to the 2026 anvi'o hackathon
#2673 opened May 22, 2026 by FlorianTrigodet Contributor Loading…
5
anvi-summarize: adding --light-summary for reporting coverage but not bin info hackathon 2026 ideas, code, and plans related to the 2026 anvi'o hackathon
#2672 opened May 22, 2026 by btrouche Contributor Loading…
Add anvi-screw-you: It empathizes with the user once they are frustrated hackathon 2026 ideas, code, and plans related to the 2026 anvi'o hackathon
#2671 opened May 22, 2026 by sarilog Contributor Loading…
2
Add modifications parsing from MM and ML tags in BAMs during anvi-profile hackathon 2026 ideas, code, and plans related to the 2026 anvi'o hackathon
#2663 opened May 21, 2026 by Ge0rges Collaborator Loading…
1
@Ge0rges
6
Add first-class PHROGs support via anvi-setup-phrogs and anvi-run-phrogs hackathon 2026 ideas, code, and plans related to the 2026 anvi'o hackathon
#2649 opened May 20, 2026 by Copilot AI Loading…
1
@Ge0rges
4
Profile read clipping events from BAM files hackathon 2026 ideas, code, and plans related to the 2026 anvi'o hackathon
#2645 opened May 20, 2026 by FlorianTrigodet Contributor Loading…
@FlorianTrigodet
General implementation for annotation with user-defined databases hackathon 2026 ideas, code, and plans related to the 2026 anvi'o hackathon
#2644 opened May 20, 2026 by l-gallucci Contributor Loading…
2
anvi-compute-functional-consensus: *FunctionalConsensus classes hackathon 2026 ideas, code, and plans related to the 2026 anvi'o hackathon
#2633 opened May 20, 2026 by ChiaraVanni Contributor Loading…
1
Python 3.14 support
#2628 opened May 20, 2026 by ulgens Collaborator • Draft
Add Python 3.11 support
#2625 opened May 20, 2026 by ulgens Collaborator • Draft
@ulgens
1
Enrich ruff rules
#2592 opened Apr 30, 2026 by ulgens Collaborator • Draft
1
Don't override default ruff rules selection
#2582 opened Apr 28, 2026 by ulgens Collaborator • Draft
3
Adding a Distribution of Coverage (DisCov) statistic to anvi'o profiling
#2563 opened Apr 12, 2026 by ivagljiva Contributor Loading…
4 of 5 tasks
6
remove prodigal driver and multithread class
#2536 opened Feb 2, 2026 by FlorianTrigodet Contributor Loading…
@FlorianTrigodet
1
tRNA taxonomy v226
#2492 opened Nov 10, 2025 by FlorianTrigodet Contributor Loading…
@FlorianTrigodet
8
Bump scikit-learn from 1.2.2 to 1.6.0 dependencies Pull requests that update a dependency file python Pull requests that update python code
#2459 opened Jul 30, 2025 by dependabot Bot Loading…
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