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Update PBMC case studies documentation#23

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danielsarj wants to merge 1 commit intomainfrom
update_docs
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Update PBMC case studies documentation#23
danielsarj wants to merge 1 commit intomainfrom
update_docs

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Summary

This PR updates documentation across all three PBMC case studies.

Changes

All case studies

  • Converted #rule-descriptions and #examine-the-output-directory-structure sections to bullet points for improved readability
  • Added missing anndata_threads and anndata_mem_gb arguments to the example config files

PBMC_GEX.md

  • Added a new section at the bottom with instructions for loading the final AnnData object into R for analysis with Seurat

PBMC_3k_multiome.md

  • Fixed a bug in step 2 of #set-up-the-input-files where the placeholder path /path/to/fastqs/ was not removed from pbmc_unsorted_3k_library.csv

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