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- the tests have been using an installed sickle version, which was in PATH, not the built ones
- I added these tests just out of curiosity to try to integrate valgrind into the test suite - also fixes the only detected leaks which are rather trivial and would have been non-problematic anyway (just to make the tests pass)
... this should be done by the devs to assure configure will check everything
- the included, outdated kseq.h is removed - instead configure checks for htslib via pkg-config - htslib includes the latest version of kseq.h, latest htslib is 1.2.1 as of this writing - the __KS* and __KSEQ* imports have changed a bit, they are modified to work with the latest kseq.h/htslib version without throwing compiler warnings
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The latest commits now fix #32. |
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adds a test for #32