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Merged
JoseEspinosa merged 5 commits into from
Jun 22, 2026
Merged

Adapt bw bg file suffixes #520

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e3db36c
changed the bedgraph suffix from .mLB. to .mLb.
Kevin-Brockers Jun 20, 2026
9f13397
Updated snapshots
Kevin-Brockers Jun 20, 2026
844bcac
Updated Changelog
Kevin-Brockers Jun 20, 2026
cdff59b
Update CHANGELOG.md
JoseEspinosa Jun 22, 2026
7f3fb6c
Apply suggestion from @JoseEspinosa
JoseEspinosa Jun 22, 2026
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4 changes: 3 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -27,7 +27,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [[#479](https://github.com/nf-core/chipseq/issues/479)] - Changed the usage documentation for antibodies to be
required for IP samples. Since a ChIP IP sample will always have an antibody, it should be specified to distinguish
the sample from input/controls.
- [[PR #514](https://github.com/nf-core/chipseq/pull/514)] - Updated pipeline template to [nf-core/tools 4.0.2](https://github.com/nf-core/tools/releases/tag/4.0.2)
- [[PR #514](https://github.com/nf-core/chipseq/pull/514)] - Updated pipeline template to [nf-core/tools
4.0.2](https://github.com/nf-core/tools/releases/tag/4.0.2).
- [[#519] (https://github.com/nf-core/chipseq/issues/519)] - Changed merged libraries suffix to `.mLb.`.

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### Parameters

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2 changes: 1 addition & 1 deletion conf/modules.config
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Original file line number Diff line number Diff line change
Expand Up @@ -449,7 +449,7 @@ process {
args << "-bga"
return args.join(' ')
}
ext.prefix = { "${meta.id}.mLB.clN" }
ext.prefix = { "${meta.id}.mLb.clN" }
publishDir = [
[
path: { "${params.outdir}/${params.aligner}/merged_library/bigwig" },
Expand Down
30 changes: 15 additions & 15 deletions tests/bowtie2.nf.test.snap
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Original file line number Diff line number Diff line change
Expand Up @@ -134,17 +134,17 @@
"bowtie2/merged_library/SPT5_T15_REP2.mLb.clN.sorted.bam",
"bowtie2/merged_library/SPT5_T15_REP2.mLb.clN.sorted.bam.bai",
"bowtie2/merged_library/bigwig",
"bowtie2/merged_library/bigwig/SPT5_INPUT_REP1.mLB.clN.bedGraph",
"bowtie2/merged_library/bigwig/SPT5_INPUT_REP1.mLb.clN.bedGraph",
"bowtie2/merged_library/bigwig/SPT5_INPUT_REP1.mLb.clN.bigWig",
"bowtie2/merged_library/bigwig/SPT5_INPUT_REP2.mLB.clN.bedGraph",
"bowtie2/merged_library/bigwig/SPT5_INPUT_REP2.mLb.clN.bedGraph",
"bowtie2/merged_library/bigwig/SPT5_INPUT_REP2.mLb.clN.bigWig",
"bowtie2/merged_library/bigwig/SPT5_T0_REP1.mLB.clN.bedGraph",
"bowtie2/merged_library/bigwig/SPT5_T0_REP1.mLb.clN.bedGraph",
"bowtie2/merged_library/bigwig/SPT5_T0_REP1.mLb.clN.bigWig",
"bowtie2/merged_library/bigwig/SPT5_T0_REP2.mLB.clN.bedGraph",
"bowtie2/merged_library/bigwig/SPT5_T0_REP2.mLb.clN.bedGraph",
"bowtie2/merged_library/bigwig/SPT5_T0_REP2.mLb.clN.bigWig",
"bowtie2/merged_library/bigwig/SPT5_T15_REP1.mLB.clN.bedGraph",
"bowtie2/merged_library/bigwig/SPT5_T15_REP1.mLb.clN.bedGraph",
"bowtie2/merged_library/bigwig/SPT5_T15_REP1.mLb.clN.bigWig",
"bowtie2/merged_library/bigwig/SPT5_T15_REP2.mLB.clN.bedGraph",
"bowtie2/merged_library/bigwig/SPT5_T15_REP2.mLb.clN.bedGraph",
"bowtie2/merged_library/bigwig/SPT5_T15_REP2.mLb.clN.bigWig",
"bowtie2/merged_library/deepTools",
"bowtie2/merged_library/deepTools/plotFingerprint",
Expand Down Expand Up @@ -808,12 +808,12 @@
"trimgalore/logs/SPT5_T15_REP2_T1_2.fastq.gz_trimming_report.txt"
],
[
"SPT5_INPUT_REP1.mLB.clN.bedGraph:md5,3185527dd339a8dbcca453f97ecc0860",
"SPT5_INPUT_REP2.mLB.clN.bedGraph:md5,bdc6ce913840caa034fe12f11dc3f821",
"SPT5_T0_REP1.mLB.clN.bedGraph:md5,a1c995094ac610f67f74037882713be1",
"SPT5_T0_REP2.mLB.clN.bedGraph:md5,ac8049a66f664f4f52e55738bb1b8482",
"SPT5_T15_REP1.mLB.clN.bedGraph:md5,6594e02d144dcf85f39b5c7339e11db6",
"SPT5_T15_REP2.mLB.clN.bedGraph:md5,3afb695bb7014e0d8df83cda30d4731d",
"SPT5_INPUT_REP1.mLb.clN.bedGraph:md5,3185527dd339a8dbcca453f97ecc0860",
"SPT5_INPUT_REP2.mLb.clN.bedGraph:md5,bdc6ce913840caa034fe12f11dc3f821",
"SPT5_T0_REP1.mLb.clN.bedGraph:md5,a1c995094ac610f67f74037882713be1",
"SPT5_T0_REP2.mLb.clN.bedGraph:md5,ac8049a66f664f4f52e55738bb1b8482",
"SPT5_T15_REP1.mLb.clN.bedGraph:md5,6594e02d144dcf85f39b5c7339e11db6",
"SPT5_T15_REP2.mLb.clN.bedGraph:md5,3afb695bb7014e0d8df83cda30d4731d",
"SPT5_T0_REP1_peaks.broadPeak:md5,27d134afd2953dafa22e35dcf8ec2bcc",
"SPT5_T0_REP1_peaks.gappedPeak:md5,f221f53d1a6486714ad50664ef440ca7",
"SPT5_T0_REP1_peaks.xls:md5,5cd75fde29ae6f23e7eeebd9da4bcfd9",
Expand Down Expand Up @@ -946,10 +946,10 @@
"samplesheet.valid.csv:md5,276425084544b3baf533e2f17207a384"
]
],
"timestamp": "2026-03-26T13:38:56.98274",
"timestamp": "2026-06-20T09:06:05.68183",
"meta": {
"nf-test": "0.9.4",
"nextflow": "25.04.0"
"nf-test": "0.9.5",
"nextflow": "26.04.0"
}
},
"bowtie2 with stub": {
Expand Down
30 changes: 15 additions & 15 deletions tests/chromap.nf.test.snap
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Original file line number Diff line number Diff line change
Expand Up @@ -126,17 +126,17 @@
"chromap/merged_library/SPT5_T15_REP2.mLb.clN.sorted.bam",
"chromap/merged_library/SPT5_T15_REP2.mLb.clN.sorted.bam.bai",
"chromap/merged_library/bigwig",
"chromap/merged_library/bigwig/SPT5_INPUT_REP1.mLB.clN.bedGraph",
"chromap/merged_library/bigwig/SPT5_INPUT_REP1.mLb.clN.bedGraph",
"chromap/merged_library/bigwig/SPT5_INPUT_REP1.mLb.clN.bigWig",
"chromap/merged_library/bigwig/SPT5_INPUT_REP2.mLB.clN.bedGraph",
"chromap/merged_library/bigwig/SPT5_INPUT_REP2.mLb.clN.bedGraph",
"chromap/merged_library/bigwig/SPT5_INPUT_REP2.mLb.clN.bigWig",
"chromap/merged_library/bigwig/SPT5_T0_REP1.mLB.clN.bedGraph",
"chromap/merged_library/bigwig/SPT5_T0_REP1.mLb.clN.bedGraph",
"chromap/merged_library/bigwig/SPT5_T0_REP1.mLb.clN.bigWig",
"chromap/merged_library/bigwig/SPT5_T0_REP2.mLB.clN.bedGraph",
"chromap/merged_library/bigwig/SPT5_T0_REP2.mLb.clN.bedGraph",
"chromap/merged_library/bigwig/SPT5_T0_REP2.mLb.clN.bigWig",
"chromap/merged_library/bigwig/SPT5_T15_REP1.mLB.clN.bedGraph",
"chromap/merged_library/bigwig/SPT5_T15_REP1.mLb.clN.bedGraph",
"chromap/merged_library/bigwig/SPT5_T15_REP1.mLb.clN.bigWig",
"chromap/merged_library/bigwig/SPT5_T15_REP2.mLB.clN.bedGraph",
"chromap/merged_library/bigwig/SPT5_T15_REP2.mLb.clN.bedGraph",
"chromap/merged_library/bigwig/SPT5_T15_REP2.mLb.clN.bigWig",
"chromap/merged_library/deepTools",
"chromap/merged_library/deepTools/plotFingerprint",
Expand Down Expand Up @@ -803,12 +803,12 @@
"trimgalore/logs/SPT5_T15_REP2_T1_2.fastq.gz_trimming_report.txt"
],
[
"SPT5_INPUT_REP1.mLB.clN.bedGraph:md5,e18a171dc9e71782335f2ca933da0773",
"SPT5_INPUT_REP2.mLB.clN.bedGraph:md5,3155c2b26db574cfccbb0388dea6617a",
"SPT5_T0_REP1.mLB.clN.bedGraph:md5,2497e5d9197400d42d51641f82c017b3",
"SPT5_T0_REP2.mLB.clN.bedGraph:md5,552f2dc1010cea4e1d822081409bb11b",
"SPT5_T15_REP1.mLB.clN.bedGraph:md5,52c8de5177ed6d20c2e598d9d9717de4",
"SPT5_T15_REP2.mLB.clN.bedGraph:md5,66db76ce702dea56dd5fb9a8b261a7fb",
"SPT5_INPUT_REP1.mLb.clN.bedGraph:md5,e18a171dc9e71782335f2ca933da0773",
"SPT5_INPUT_REP2.mLb.clN.bedGraph:md5,3155c2b26db574cfccbb0388dea6617a",
"SPT5_T0_REP1.mLb.clN.bedGraph:md5,2497e5d9197400d42d51641f82c017b3",
"SPT5_T0_REP2.mLb.clN.bedGraph:md5,552f2dc1010cea4e1d822081409bb11b",
"SPT5_T15_REP1.mLb.clN.bedGraph:md5,52c8de5177ed6d20c2e598d9d9717de4",
"SPT5_T15_REP2.mLb.clN.bedGraph:md5,66db76ce702dea56dd5fb9a8b261a7fb",
"SPT5_T0_REP1_peaks.broadPeak:md5,b4a7e2305ed63853b04d5e18678ea27a",
"SPT5_T0_REP1_peaks.gappedPeak:md5,2765b191811a573296f0122b9a270e4b",
"SPT5_T0_REP1_peaks.xls:md5,c98206fe98326026daf9f76a72de3e5b",
Expand Down Expand Up @@ -942,10 +942,10 @@
"samplesheet.valid.csv:md5,276425084544b3baf533e2f17207a384"
]
],
"timestamp": "2026-03-26T13:48:17.847211",
"timestamp": "2026-06-20T09:16:06.518313",
"meta": {
"nf-test": "0.9.4",
"nextflow": "25.04.0"
"nf-test": "0.9.5",
"nextflow": "26.04.0"
}
},
"chromap with stub": {
Expand Down
30 changes: 15 additions & 15 deletions tests/default.nf.test.snap
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Original file line number Diff line number Diff line change
Expand Up @@ -133,17 +133,17 @@
"bwa/merged_library/SPT5_T15_REP2.mLb.clN.sorted.bam",
"bwa/merged_library/SPT5_T15_REP2.mLb.clN.sorted.bam.bai",
"bwa/merged_library/bigwig",
"bwa/merged_library/bigwig/SPT5_INPUT_REP1.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_INPUT_REP1.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_INPUT_REP1.mLb.clN.bigWig",
"bwa/merged_library/bigwig/SPT5_INPUT_REP2.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_INPUT_REP2.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_INPUT_REP2.mLb.clN.bigWig",
"bwa/merged_library/bigwig/SPT5_T0_REP1.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T0_REP1.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T0_REP1.mLb.clN.bigWig",
"bwa/merged_library/bigwig/SPT5_T0_REP2.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T0_REP2.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T0_REP2.mLb.clN.bigWig",
"bwa/merged_library/bigwig/SPT5_T15_REP1.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T15_REP1.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T15_REP1.mLb.clN.bigWig",
"bwa/merged_library/bigwig/SPT5_T15_REP2.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T15_REP2.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T15_REP2.mLb.clN.bigWig",
"bwa/merged_library/deepTools",
"bwa/merged_library/deepTools/plotFingerprint",
Expand Down Expand Up @@ -807,12 +807,12 @@
"trimgalore/logs/SPT5_T15_REP2_T1_2.fastq.gz_trimming_report.txt"
],
[
"SPT5_INPUT_REP1.mLB.clN.bedGraph:md5,0a93a9e9e1c5c89f62050e0a2c12ca31",
"SPT5_INPUT_REP2.mLB.clN.bedGraph:md5,729d6cd9bd4e7a1e8ffc2f1cadc6483e",
"SPT5_T0_REP1.mLB.clN.bedGraph:md5,7d6d55a647a218f65b2b1653ba4b930d",
"SPT5_T0_REP2.mLB.clN.bedGraph:md5,b6d1bb76e3dcb321d010762ca8046fa6",
"SPT5_T15_REP1.mLB.clN.bedGraph:md5,2e0f7340ba33729e7a46f75965168481",
"SPT5_T15_REP2.mLB.clN.bedGraph:md5,a013dd85f9fdbd134b51058260bf7941",
"SPT5_INPUT_REP1.mLb.clN.bedGraph:md5,0a93a9e9e1c5c89f62050e0a2c12ca31",
"SPT5_INPUT_REP2.mLb.clN.bedGraph:md5,729d6cd9bd4e7a1e8ffc2f1cadc6483e",
"SPT5_T0_REP1.mLb.clN.bedGraph:md5,7d6d55a647a218f65b2b1653ba4b930d",
"SPT5_T0_REP2.mLb.clN.bedGraph:md5,b6d1bb76e3dcb321d010762ca8046fa6",
"SPT5_T15_REP1.mLb.clN.bedGraph:md5,2e0f7340ba33729e7a46f75965168481",
"SPT5_T15_REP2.mLb.clN.bedGraph:md5,a013dd85f9fdbd134b51058260bf7941",
"SPT5_T0_REP1_peaks.broadPeak:md5,0574cd91ce590e3be41c9057c6d4ea25",
"SPT5_T0_REP1_peaks.gappedPeak:md5,95203ab9aa297a4c52a4c8bbc8603fd7",
"SPT5_T0_REP1_peaks.xls:md5,f2dc646828f6d1da711e8c57f939b1fa",
Expand Down Expand Up @@ -945,10 +945,10 @@
"samplesheet.valid.csv:md5,276425084544b3baf533e2f17207a384"
]
],
"timestamp": "2026-03-26T13:57:56.16437",
"timestamp": "2026-06-20T09:26:27.903591",
"meta": {
"nf-test": "0.9.4",
"nextflow": "25.04.0"
"nf-test": "0.9.5",
"nextflow": "26.04.0"
}
}
}
30 changes: 15 additions & 15 deletions tests/skip_consensus_peaks.nf.test.snap
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Original file line number Diff line number Diff line change
Expand Up @@ -129,17 +129,17 @@
"bwa/merged_library/SPT5_T15_REP2.mLb.clN.sorted.bam",
"bwa/merged_library/SPT5_T15_REP2.mLb.clN.sorted.bam.bai",
"bwa/merged_library/bigwig",
"bwa/merged_library/bigwig/SPT5_INPUT_REP1.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_INPUT_REP1.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_INPUT_REP1.mLb.clN.bigWig",
"bwa/merged_library/bigwig/SPT5_INPUT_REP2.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_INPUT_REP2.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_INPUT_REP2.mLb.clN.bigWig",
"bwa/merged_library/bigwig/SPT5_T0_REP1.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T0_REP1.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T0_REP1.mLb.clN.bigWig",
"bwa/merged_library/bigwig/SPT5_T0_REP2.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T0_REP2.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T0_REP2.mLb.clN.bigWig",
"bwa/merged_library/bigwig/SPT5_T15_REP1.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T15_REP1.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T15_REP1.mLb.clN.bigWig",
"bwa/merged_library/bigwig/SPT5_T15_REP2.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T15_REP2.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T15_REP2.mLb.clN.bigWig",
"bwa/merged_library/deepTools",
"bwa/merged_library/deepTools/plotFingerprint",
Expand Down Expand Up @@ -760,12 +760,12 @@
"trimgalore/logs/SPT5_T15_REP2_T1_2.fastq.gz_trimming_report.txt"
],
[
"SPT5_INPUT_REP1.mLB.clN.bedGraph:md5,0a93a9e9e1c5c89f62050e0a2c12ca31",
"SPT5_INPUT_REP2.mLB.clN.bedGraph:md5,729d6cd9bd4e7a1e8ffc2f1cadc6483e",
"SPT5_T0_REP1.mLB.clN.bedGraph:md5,7d6d55a647a218f65b2b1653ba4b930d",
"SPT5_T0_REP2.mLB.clN.bedGraph:md5,b6d1bb76e3dcb321d010762ca8046fa6",
"SPT5_T15_REP1.mLB.clN.bedGraph:md5,2e0f7340ba33729e7a46f75965168481",
"SPT5_T15_REP2.mLB.clN.bedGraph:md5,a013dd85f9fdbd134b51058260bf7941",
"SPT5_INPUT_REP1.mLb.clN.bedGraph:md5,0a93a9e9e1c5c89f62050e0a2c12ca31",
"SPT5_INPUT_REP2.mLb.clN.bedGraph:md5,729d6cd9bd4e7a1e8ffc2f1cadc6483e",
"SPT5_T0_REP1.mLb.clN.bedGraph:md5,7d6d55a647a218f65b2b1653ba4b930d",
"SPT5_T0_REP2.mLb.clN.bedGraph:md5,b6d1bb76e3dcb321d010762ca8046fa6",
"SPT5_T15_REP1.mLb.clN.bedGraph:md5,2e0f7340ba33729e7a46f75965168481",
"SPT5_T15_REP2.mLb.clN.bedGraph:md5,a013dd85f9fdbd134b51058260bf7941",
"SPT5_T0_REP1_peaks.broadPeak:md5,0574cd91ce590e3be41c9057c6d4ea25",
"SPT5_T0_REP1_peaks.gappedPeak:md5,95203ab9aa297a4c52a4c8bbc8603fd7",
"SPT5_T0_REP1_peaks.xls:md5,f2dc646828f6d1da711e8c57f939b1fa",
Expand Down Expand Up @@ -886,10 +886,10 @@
"samplesheet.valid.csv:md5,276425084544b3baf533e2f17207a384"
]
],
"timestamp": "2026-03-26T14:06:46.726058",
"timestamp": "2026-06-20T09:35:30.906145",
"meta": {
"nf-test": "0.9.4",
"nextflow": "25.04.0"
"nf-test": "0.9.5",
"nextflow": "26.04.0"
}
}
}
30 changes: 15 additions & 15 deletions tests/skip_trimming.nf.test.snap
View file
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Original file line number Diff line number Diff line change
Expand Up @@ -130,17 +130,17 @@
"bwa/merged_library/SPT5_T15_REP2.mLb.clN.sorted.bam",
"bwa/merged_library/SPT5_T15_REP2.mLb.clN.sorted.bam.bai",
"bwa/merged_library/bigwig",
"bwa/merged_library/bigwig/SPT5_INPUT_REP1.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_INPUT_REP1.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_INPUT_REP1.mLb.clN.bigWig",
"bwa/merged_library/bigwig/SPT5_INPUT_REP2.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_INPUT_REP2.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_INPUT_REP2.mLb.clN.bigWig",
"bwa/merged_library/bigwig/SPT5_T0_REP1.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T0_REP1.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T0_REP1.mLb.clN.bigWig",
"bwa/merged_library/bigwig/SPT5_T0_REP2.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T0_REP2.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T0_REP2.mLb.clN.bigWig",
"bwa/merged_library/bigwig/SPT5_T15_REP1.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T15_REP1.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T15_REP1.mLb.clN.bigWig",
"bwa/merged_library/bigwig/SPT5_T15_REP2.mLB.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T15_REP2.mLb.clN.bedGraph",
"bwa/merged_library/bigwig/SPT5_T15_REP2.mLb.clN.bigWig",
"bwa/merged_library/deepTools",
"bwa/merged_library/deepTools/plotFingerprint",
Expand Down Expand Up @@ -700,12 +700,12 @@
"pipeline_info/samplesheet.valid.csv"
],
[
"SPT5_INPUT_REP1.mLB.clN.bedGraph:md5,cd382620d1d0b392cc476acb3ee5b64c",
"SPT5_INPUT_REP2.mLB.clN.bedGraph:md5,adeb44bad86ea7074ac4900b8d04e1e9",
"SPT5_T0_REP1.mLB.clN.bedGraph:md5,9169ca9f49eb70a6d282b00d94e8bbb0",
"SPT5_T0_REP2.mLB.clN.bedGraph:md5,0155d0171022e7cef596facf4d4f12f7",
"SPT5_T15_REP1.mLB.clN.bedGraph:md5,53acbef45032a4c58766c9d220e1a761",
"SPT5_T15_REP2.mLB.clN.bedGraph:md5,d2fbf8ad95d452e738f36081d51e4d22",
"SPT5_INPUT_REP1.mLb.clN.bedGraph:md5,cd382620d1d0b392cc476acb3ee5b64c",
"SPT5_INPUT_REP2.mLb.clN.bedGraph:md5,adeb44bad86ea7074ac4900b8d04e1e9",
"SPT5_T0_REP1.mLb.clN.bedGraph:md5,9169ca9f49eb70a6d282b00d94e8bbb0",
"SPT5_T0_REP2.mLb.clN.bedGraph:md5,0155d0171022e7cef596facf4d4f12f7",
"SPT5_T15_REP1.mLb.clN.bedGraph:md5,53acbef45032a4c58766c9d220e1a761",
"SPT5_T15_REP2.mLb.clN.bedGraph:md5,d2fbf8ad95d452e738f36081d51e4d22",
"SPT5_T0_REP1_peaks.broadPeak:md5,ddf2e346dd0b80bd433c09312d31cb51",
"SPT5_T0_REP1_peaks.gappedPeak:md5,38996ca713aeb8069165e347e69bed89",
"SPT5_T0_REP1_peaks.xls:md5,d68f4b095c466fccb5c65c8807f142a2",
Expand Down Expand Up @@ -823,10 +823,10 @@
"samplesheet.valid.csv:md5,276425084544b3baf533e2f17207a384"
]
],
"timestamp": "2026-03-26T14:16:04.604869",
"timestamp": "2026-06-20T09:44:50.992423",
"meta": {
"nf-test": "0.9.4",
"nextflow": "25.04.0"
"nf-test": "0.9.5",
"nextflow": "26.04.0"
}
},
"skip_trimming with stub": {
Expand Down
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