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Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
Bump version to dev
Important! Template update for nf-core/tools v3.3.2
Added HiRSE Code Promo Badge to README
Add HiRSE Code Promo Badge
Update default zenodo link to the latest version
…pted baseline methods
Update to new runner size syntax
container conversion and arm setup
Update local modules
Fix config for local modules
manually updating nextflow version to avoid conda mkdir error
…cumentation fixes
…or all nextflow modules, so that the python scripts are no longer needed.
Updating to drevalpy 1.4.1 for CLI commands
Rollback conda
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Issue: the download action is failing.
It is somehow failing because it cannot pull the image.
Idea?
Adding
container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container
? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/88/88d06bd843a342074e5def5c95e7d993cfe4a7f0acb7c41eb6c00e78d9ce8654/data'
: 'python_pip_drevalpy:a2b7a0d499377204'}"
everywhere.
This is a little redundant in any case because the container declaration does not really matter anymore because we now have configs. Just seeing what this does to the action. ----> that's not it.
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).