update container configs with most recent tools functions#80
Draft
mashehu wants to merge 11 commits intonf-core:devfrom
Draft
update container configs with most recent tools functions#80mashehu wants to merge 11 commits intonf-core:devfrom
mashehu wants to merge 11 commits intonf-core:devfrom
Conversation
Collaborator
|
Thanks for looking into this again!! As far as I can see, the condalock files are still missing the pip dependencies (-> the drevalpy dependency). https://community.seqera.io/t/condalock-files-generated-by-wave/2508/4 |
Contributor
Author
|
I think I found a way of keeping the pip dependencies by switching the build-template, but unfortunately I ran then into other hurdles on the way... but I will keep working on this. Since the conda containers are working (see passing tests) and listed in the |
3034ad1 to
9847f43
Compare
Contributor
Author
|
tests failing due to seqeralabs/wave#973 and no singularity for arm action atm |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
added the local conda lock files and udpate meta.yml with nf-core/tools#3954 and new configs generated with nf-core/tools#3955