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RFC: document GPU container variants in meta.yml (ribodetector) #11259

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RFC: document GPU container variants in meta.yml (ribodetector) #11259

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aa23854
fix: update ribodetector GPU container to CUDA 12.x
pinin4fjords Apr 22, 2026
f034643
rfc: add containers section to ribodetector meta.yml with GPU variants
pinin4fjords Apr 22, 2026
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3 changes: 2 additions & 1 deletion modules/nf-core/ribodetector/environment.gpu.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -5,4 +5,5 @@ channels:
- bioconda
dependencies:
- "bioconda::ribodetector=0.3.3"
- "conda-forge::pytorch-gpu=1.11.0"
- "conda-forge::pytorch-gpu=2.10.0"
- "conda-forge::cuda-version>=12,<13"
4 changes: 2 additions & 2 deletions modules/nf-core/ribodetector/main.nf
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Expand Up @@ -4,8 +4,8 @@ process RIBODETECTOR {

conda "${ task.accelerator ? "${moduleDir}/environment.gpu.yml" : "${moduleDir}/environment.yml" }"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
(task.accelerator ? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/eb/ebcccef2cd8b4c10d4bbd8fce542b46502b7817115cb144b9566792b0aac9bc0/data' : 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/46/463b8ad941e7f1f2decef20844d666c1c8ac233e166d2bc766164c4a93905a3c/data') :
(task.accelerator ? 'community.wave.seqera.io/library/ribodetector_pytorch-gpu:f2d45093d4093307' : 'community.wave.seqera.io/library/ribodetector:0.3.3--ad3d7071e408b502') }"
(task.accelerator ? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/b7/b71fb81b909f9d1e1090e3d1d8f10b9da95405bed1d0f01a6be71f0ef0b51170/data' : 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/46/463b8ad941e7f1f2decef20844d666c1c8ac233e166d2bc766164c4a93905a3c/data') :
(task.accelerator ? 'community.wave.seqera.io/library/ribodetector_pytorch-gpu_cuda-version:811a681473448f10' : 'community.wave.seqera.io/library/ribodetector:0.3.3--ad3d7071e408b502') }"

input:
tuple val(meta), path(fastq)
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35 changes: 35 additions & 0 deletions modules/nf-core/ribodetector/meta.yml
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Expand Up @@ -93,3 +93,38 @@ authors:
- "@maxibor"
maintainers:
- "@maxibor"
containers:
docker:
linux/amd64:
name: community.wave.seqera.io/library/ribodetector:0.3.3--ad3d7071e408b502
build_id: bd-ad3d7071e408b502_1
scan_id: sc-408506540aa13673_3
linux/arm64:
name: community.wave.seqera.io/library/ribodetector:0.3.3--6a7080e95297ee85
build_id: bd-6a7080e95297ee85_1
scan_id: sc-616160e1b9188bd4_2
linux/amd64+cuda12:
name: community.wave.seqera.io/library/ribodetector_pytorch-gpu_cuda-version:811a681473448f10
build_id: bd-811a681473448f10_1
scan_id: sc-bd9352efb9c141d2_1
linux/amd64+cuda11:
name: community.wave.seqera.io/library/ribodetector_pytorch-gpu_cuda-version:b13a02b25508139f
build_id: bd-b13a02b25508139f_1
scan_id: sc-60e9801765c6a0f0_1
singularity:
linux/amd64:
name: oras://community.wave.seqera.io/library/ribodetector:0.3.3--5932c2e0c31912db
build_id: bd-5932c2e0c31912db_1
https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/46/463b8ad941e7f1f2decef20844d666c1c8ac233e166d2bc766164c4a93905a3c/data
linux/arm64:
name: oras://community.wave.seqera.io/library/ribodetector:0.3.3--9376f5e1554cc026
build_id: bd-9376f5e1554cc026_1
https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/8a/8ad4d85aa47f5b2562e9ecfa7e464e7d1e054eb321043d8e8a33c3a9159ae811/data
linux/amd64+cuda12:
name: oras://community.wave.seqera.io/library/ribodetector_pytorch-gpu_cuda-version:cced3ad1f9589501
build_id: bd-cced3ad1f9589501_1
https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/b7/b71fb81b909f9d1e1090e3d1d8f10b9da95405bed1d0f01a6be71f0ef0b51170/data
linux/amd64+cuda11:
name: oras://community.wave.seqera.io/library/ribodetector_pytorch-gpu_cuda-version:98b9ed04a509e20d
build_id: bd-98b9ed04a509e20d_1
https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/56/562a5060502d049a50cf863a323c216dd3ca81f1817dfff73970169c704800d4/data
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