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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.5.2. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
PBCPGTOOLS_ALIGNEDBAMTOCPGSCORES
remove bcftools/view
${meta.id}_discover and ${meta.id}_jointcall, respectively.
and as channels in main.nf, which passed to pacvar.nf as parameters.
cnv_exclude_regions_bed, to expected_cv and cnv_excluded_regions (as defined in the original sawfish package).
ch_versions.mix(SAMTOOLS_SORT.out.versions)` for sarmtools/sort using topic-based version
channels in the TRGT modules.
Bump v1.1.0 before release
for repeat workflow
Fix changelog
Address release PR issues
Reviewer comments tackle
post-release version bump
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Do not merge! This is a PR of dev compared to the TEMPLATE branch for whole-pipeline reviewing purposes. Changes should be made to dev and this PR should not be merged into first-commit-for-pseudo-pr!