Repositories list

• sSMLM-for-DNA-intrinsic-fluorescence

  Public
  This is the codes for DNA intrinsic fluorescence spectrum extraction based on RainbowSTORM

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 29, 2025Sep 29, 2025

• SMLM-SREV

  Public
  Fortran

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 18, 2025Sep 18, 2025

• RM-FDTD-PWS

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 10, 2025Jul 10, 2025

• csPWS

  Public
  chromatin sensitive PWS project. Goal is to detect subnuclear changes in chromatin on PWS images on both in vitro/in vivo samples.

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 2, 2025May 2, 2025

• CDA_Paper

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 12, 2025Mar 12, 2025

• OCSC-Transcription-Paper

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 27, 2024Nov 27, 2024

• 3D-FISH-Paper

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 27, 2024Nov 27, 2024

• Transcription

  Public
  A repository for the Transcription project

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 11, 2024Oct 11, 2024

• Cut-Tag

  Public
  A repository to hold code for Backman Lab Cut&Tag data analysis

  Shell

  •00 forks•22 stars•00 issues•00 pull requests•Updated Sep 19, 2024Sep 19, 2024

• EU-seq

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 7, 2024Sep 7, 2024

• RAD21

  Public
  Mathematica

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 29, 2024Aug 29, 2024

• Lamin-Project

  Public
  Repository for Lamin B Project Analysis

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 19, 2024Feb 19, 2024

• PWSpy

  Public
  A Python library dedicated to the analysis of Partial Wave Microscopy (PWS) data.

  Python

  •

  GNU General Public License v3.0

  •33 forks•44 stars•11 issue•00 pull requests•Updated Dec 8, 2023Dec 8, 2023

• PWSMicroManager

  Public
  A fork of the popular Micro-Manager open-source application tailored to the acquisition of Partial Wave Spectroscopic Microscopy data.

  Java

  •22 forks•00 stars•00 issues•00 pull requests•Updated Oct 25, 2022Oct 25, 2022

• pwspy_gui

  Public
  A collection of GUIs providing users with easy access to PWS data analysis.

  Python

  •

  GNU General Public License v3.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Aug 18, 2022Aug 18, 2022

• Nucleus-D-Segmentation

  Public
  MATLAB code for segmenting nuclei by 7 classes of packing density.

  MATLAB

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jan 28, 2022Jan 28, 2022

• CoregisterUtility

  Public
  A python program wrapping an imageJ plugin for opencv/interactive image coregistration.

  Python

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Dec 20, 2021Dec 20, 2021

• BackmanLab.github.io

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Oct 18, 2021Oct 18, 2021

• AngoraFDTD

  Public
  C++

  •

  GNU General Public License v3.0

  •44 forks•11 star•00 issues•00 pull requests•Updated Oct 7, 2021Oct 7, 2021

• NA-Detector

  Public
  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 28, 2021Sep 28, 2021

• mmPWSPlugin

  Public
  A plugin for Micro-Manager for automated acquisition of Partial Wave Spectroscopic Microscopy data.

  Java

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 23, 2021Sep 23, 2021

• Cell-Coverage

  Public
  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 25, 2021Aug 25, 2021

• AutoROI

  Public
  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 25, 2021Aug 25, 2021

• PWSCalibrationSuite

  Public
  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 13, 2021Aug 13, 2021