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@PerkLab The Perk Lab - Laboratory for Percutaneous Surgery

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    33 repositories

    • SlicerFreeSurfer

      Public
      This repository contains the SlicerFreeSurferImporter extension for 3D Slicer. The extension implements a module for importing models, scalar overlays, and segm…
      3d-slicer-extension
      3d-slicer-extension
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •6•18•11•0•Updated Apr 10, 2026Apr 10, 2026

    • SlicerSandbox

      Public
      Collection of utilities that are not polished implementations but can be useful to users
      Python
      •
      BSD 2-Clause "Simplified" License
      •34•97•13•3•Updated Apr 1, 2026Apr 1, 2026

    • LumbarTutor

      Public
      Python
      •1•0•1•0•Updated Feb 10, 2026Feb 10, 2026

    • MCSTrack

      Public
      Multi-camera spatial tracking
      Python
      •
      MIT License
      •4•0•19•0•Updated Feb 3, 2026Feb 3, 2026

    • SlicerOpenAnatomy

      Public
      3D Slicer extension for exporting Slicer scenes to use in the OpenAnatomy.org browser
      3d-slicer-extension
      3d-slicer-extension
      Python
      •8•26•6•2•Updated Oct 8, 2025Oct 8, 2025

    • PerkLabBootcamp

      Public
      Materials for the yearly PerkLab bootcamp course
      34•97•0•0•Updated Jul 29, 2025Jul 29, 2025

    • NephrostomyTutor

      Public
      Python
      •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • Benchtop_Imaging_Robot

      Public
      Makefile
      •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

    • aigt-UltrasounfSegmentation

      Public
      Deep learning software modules for image-guided medical procedures
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •48•0•0•0•Updated Oct 12, 2024Oct 12, 2024

    • aigt-UltrasoundSegmentation

      Public
      segmentation AI training code
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •48•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • SlicerMatlabBridge

      Public
      MatlabBridge extension for 3D Slicer
      MATLAB
      •10•19•6•0•Updated Apr 23, 2024Apr 23, 2024

    • SlicerSkinMouldGenerator

      Public
      3D Slicer extension for generating 3D-printable skin moulds for radiation therapy
      3d-slicer-extension
      3d-slicer-extension
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•5•1•0•Updated Apr 23, 2024Apr 23, 2024

    • SlicerVolumeClip

      Public
      3D Slicer extension for clipping volume with surface or ROI box
      Python
      •5•0•0•0•Updated Apr 23, 2024Apr 23, 2024

    • Spectroscopy_TrackedTissueSensing

      Public
      Codebase for the project titled "Development of a research testbed for intraoperative optical spectroscopy tumour margin assessment" conducted by David Morton 2…
      Jupyter Notebook
      •0•0•29•0•Updated Dec 27, 2023Dec 27, 2023

    • SegmentationComparison

      Public
      Python
      •2•2•0•0•Updated Oct 21, 2023Oct 21, 2023

    • SpineGuidance

      Public
      Spinal needle guidance based on ultrasound imaging
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•5•1•0•Updated Jul 4, 2023Jul 4, 2023

    • PolySeg

      Public
      Library for polymorph segmentation representation for medical image computing
      C++
      •
      BSD 2-Clause "Simplified" License
      •4•28•4•1•Updated Jun 13, 2023Jun 13, 2023

    • BreastReconstruction

      Public
      Tool for breast reconstruction surgery planning
      3d-slicer-extension
      3d-slicer-extension
      Python
      •0•2•0•0•Updated Feb 1, 2023Feb 1, 2023

    • BootcampSandbox

      Public
      Repository for free experimentation with github
      Python
      •41•2•0•0•Updated May 24, 2022May 24, 2022

    • ProstateZoneOverlay

      Public
      Python
      •0•0•0•0•Updated Apr 29, 2022Apr 29, 2022

    • TRUS_Trainer

      Public
      Python
      •0•1•0•0•Updated Apr 21, 2022Apr 21, 2022

    • LumpNavReplay

      Public
      Tools for analyzing Navigated Lumpectomy data
      Python
      •0•1•0•0•Updated Mar 26, 2021Mar 26, 2021

    • ProstateBiopsySim

      Public
      TRUS and prostate biopsy training simulator
      Python
      •0•0•0•0•Updated Nov 27, 2020Nov 27, 2020

    • DepthImageToPointCloud

      Public
      This repo contains a slicer module for generating point clouds from static or streamed depth images.
      Python
      •1•5•0•0•Updated May 1, 2020May 1, 2020

    • SkullRegistration

      Public
      Tracked ultrasound to make skull registration more accurate.
      Python
      •1•0•0•0•Updated Feb 28, 2020Feb 28, 2020

    • AblationPlanner

      Public
      Python
      •0•1•0•0•Updated Feb 7, 2020Feb 7, 2020

    • ColonCurvature

      Public
      A set of tools to analyze the curvature of colon segmentations.
      pythonskeletoncurve
      pythonskeletoncurvesegmentationcurvaturecomputed-tomographypatientscolon3dslicercolon-segmentations
      Python
      •0•4•0•0•Updated Jan 4, 2020Jan 4, 2020

    • CARS2019Tutorial

      Public
      Hands on tutorial for SlicerIGT at CARS 2019. SlicerIGT home page: http://www.slicerigt.org/wp/
      Jupyter Notebook
      •
      Apache License 2.0
      •0•3•0•0•Updated Jun 15, 2019Jun 15, 2019

    • OperationPig

      Public
      Instructions for setting up 3D Slicer based "Operation" game for outreach events for kids
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated May 14, 2019May 14, 2019

    • MirrorredSurfaceDistance

      Public
      Python
      •0•0•0•0•Updated Apr 23, 2019Apr 23, 2019
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