DeepMNEC

DeepMNEC can directly be accessed here: https://deepmnec.streamlit.app/

Running the application locally

Step 1: Install docker - follow this link https://docs.docker.com/engine/install/ubuntu/
Step 2: Download this projet
Step 3: On the docker terminal, go to the root directory of this projet where you can see the file Dockerfile
Step 4: Execute this command to build your docker image
  

docker build -t deepmnec

Step 5: Execute this command to run the application locally
  

docker run -p 8501:8501 deepmnec

Using the browser of your choice, you can access the application at http://localhost:8501

DeepMNEC for prediction

DeepMNEC needs

• Taxonomic profile table (see datas/ARIA-206_SSU_taxonomy_abundance.tsv as an example)
• DOL
• Gender
• Gestational age
• Weight
• Birth mode

The taxonomic profiles are produced by RiboTaxa, a metagenomics classifier for precise species level identification from shotgun metagenomics.