perGENIE is a Web/CUI application for personal genome interpretation. This repository contains the core utils of perGENIE, such as Disease Risk Report.

Quick Start (For non-developers)

Without installation, just download this repository and run:

$ python ./pergenie [command] [options]

Usage Examples

To run Disease Risk Report:

$ python ./pergenie riskreport -I example/vcf_whole_genome.vcf \
                               -F vcf_whole_genome \
                               -P Asian

For developpers

How to Install

If you are familier with pip:

$ pip install pergenie

Or clone this repository, then, install by setup script:

$ python setup.py install

How to run test

$ python setup.py test

License

Copyright (c) 2012,2013,2014,2015 perGENIE Team <knmkr3gma[at]gmail.com>

perGENIE is licensed under the GNU AGPLv3.0.