SingularityBaseImages

A repo for singularity images. This is linked to singularity hub and all results can be pulled from there.

Singularity Hub Images

• Singularity.R363_python368

  • To pull: singularity pull shub://drneavin/SingularityBaseImages:r363_python368
  • Contains:
    • R 3.6.3
    • python 3.6.8
    • conda
    • Some basic R packages (see the definition file to see all installed)
    • Some basic python package (see the definition file to see all installed)

• Singularity.R4_python368

  • To pull: singularity pull shub://drneavin/SingularityBaseImages:r4_python368
  • Contains:
    • R 4.0.3
    • python 3.6.8
    • conda
    • Some basic R packages (see the definition file to see all installed)
    • Some basic python package (see the definition file to see all installed)

• Singularity.TxnDoubletDetection

  • To pull: singularity pull shub://drneavin/SingularityBaseImages:txndoubletdetection
  • Built on top of Singularity.R4_python368 image
  • Also contains:
    • DoubletDetection
    • DoubletDecon
    • DoubletFinder
    • scds
    • scrublet
    • scDoubletFinder
    • solo