Fix package metadata updates on republish

[khaliqgant]

Summary

• update mutable package metadata from the latest manifest when republishing an existing package
• mark packages for AI re-enrichment when republished metadata changes
• add a regression test covering generic-to-claude republish metadata drift
• fix README package-count typo in root and CLI docs

Closes #259

Tests

• npm exec --workspace=@pr-pm/registry -- vitest run src/routes/tests/packages.test.ts
• npm run typecheck --workspace=@pr-pm/registry

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📊 4 files reviewed • 3 high risk • 5 need attention

🚨 High Risk:

• packages/registry/src/routes/packages.ts — This file introduces critical changes to the update query affecting data integrity and security. The missing validation and authorization checks are significant risks.

⚠️ Needs Attention:

• README.md — Only contains trivial changes but should still be noted for completeness.

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