Update snakeyaml to 2.6

[scala-steward-projectglow]

About this PR

📦 Updates org.yaml:snakeyaml from 2.2 to 2.6

Usage

✅ Please merge!

I'll automatically update this PR to resolve conflicts as long as you don't change it yourself.

If you'd like to skip this version, you can just close this PR. If you have any feedback, just mention me in the comments below.

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🔍 Files still referring to the old version number

The following files still refer to the old version number (2.2).
You might want to review and update them manually.

build.sbt
core/src/test/scala/io/projectglow/tertiary/SampleQcExprsSuite.scala
core/src/test/scala/io/projectglow/vcf/VariantContextToInternalRowConverterSuite.scala
docs/source/_static/notebooks/0_setup_constants_glow.html
docs/source/_static/notebooks/2_setup_metadata.html
docs/source/_static/notebooks/etl/10_liftOver.html
docs/source/_static/notebooks/etl/1_simulate_covariates_phenotypes_offset.html
docs/source/_static/notebooks/etl/2_simulate_delta_pvcf.html
docs/source/_static/notebooks/etl/3_delta_to_vcf.html
docs/source/_static/notebooks/etl/6_explode_variant_dataframe.html
docs/source/_static/notebooks/etl/7_etl_gff_annotations.html
docs/source/_static/notebooks/etl/8_create_database_for_querying.html
docs/source/_static/notebooks/etl/9_query_variant_db.html
docs/source/_static/notebooks/etl/data/download_1000G.html
docs/source/_static/notebooks/etl/merge-vcf.html
docs/source/_static/notebooks/etl/normalizevariants.html
docs/source/_static/notebooks/etl/python/functions.html
docs/source/_static/notebooks/etl/sample-qc-demo.html
docs/source/_static/notebooks/etl/splitmultiallelics-transformer.html
docs/source/_static/notebooks/etl/variant-data.html
docs/source/_static/notebooks/etl/variant-qc-demo.html
docs/source/_static/notebooks/etl/vcf2delta.html
docs/source/_static/notebooks/tertiary/0_ingest_vcf2delta.html
docs/source/_static/notebooks/tertiary/1_quality_control.html
docs/source/_static/notebooks/tertiary/2_quantitative_glowgr.html
docs/source/_static/notebooks/tertiary/3_linear_gwas_glow.html
docs/source/_static/notebooks/tertiary/4_binary_glowgr.html
docs/source/_static/notebooks/tertiary/5_logistic_gwas_glow.html
docs/source/_static/notebooks/tertiary/8_pipeline_runs_comparison.html
docs/source/_static/notebooks/tertiary/binaryglowgr.html
docs/source/_static/notebooks/tertiary/glowgr.html
docs/source/_static/notebooks/tertiary/gwas-binary.html
docs/source/_static/notebooks/tertiary/gwas-quantitative.html
docs/source/_static/notebooks/tertiary/pandas-lmm.html
docs/source/_static/notebooks/tertiary/parallel_bcftools_filter.html
docs/source/_static/notebooks/tertiary/pipe-transformer-plink.html
docs/source/_static/notebooks/tertiary/pipe-transformer-vep.html
docs/source/_static/notebooks/tertiary/pipe-transformer.html
functions.yml
project/plugins.sbt
python/glow/functions.py
python/glow/gwas/tests/test_approx_firth.py
test-data/1000G.phase3.broad.withGenotypes.chr20.10100000.vcf
test-data/1kg_sample with spaces.vcf
test-data/1kg_sample.vcf
test-data/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.vcf
test-data/NA12878_21_10002403.vcf
test-data/biallelic.CEUTrio.HiSeq.WGS.b37.NA12878.20.21.vcf
test-data/liftover/README
test-data/regenie/covariates.txt
test-data/regenie/example_3chr.sample
test-data/regenie/fit_bin_out_2.loco
test-data/regenie/phenotype.txt
test-data/regenie/test_bin_out_firth_Y1.regenie
test-data/regenie/test_bin_out_firth_Y2.regenie
test-data/regenie/test_bin_out_half_firth_Y1.regenie
test-data/regenie/test_bin_out_half_firth_Y2.regenie
test-data/regenie/test_bin_out_missing_firth_Y1.regenie
test-data/regenie/test_bin_out_missing_firth_Y2.regenie
test-data/regenie/test_lin_out_3chr_Y1.regenie
test-data/regenie/test_lin_out_3chr_Y2.regenie
test-data/regenie/test_lin_out_Y1.regenie
test-data/regenie/test_lin_out_Y2.regenie
test-data/regenie/test_lin_out_missing_Y1.regenie
test-data/regenie/test_lin_out_missing_Y2.regenie
test-data/wgr/logistic-regression/cov.csv
test-data/wgr/logistic-regression/test_map_irls_eqn.json
test-data/wgr/logistic-regression/test_reduce_irls_eqn.json
test-data/wgr/ridge-regression/X0.csv
test-data/wgr/ridge-regression/X1.csv
test-data/wgr/ridge-regression/X2.csv
test-data/wgr/ridge-regression/pts.csv

⚙ Adjust future updates

Add this to your .scala-steward.conf file to ignore future updates of this dependency:

updates.ignore = [ { groupId = "org.yaml", artifactId = "snakeyaml" } ]

Or, add this to slow down future updates of this dependency:

dependencyOverrides = [{
  pullRequests = { frequency = "30 days" },
  dependency = { groupId = "org.yaml", artifactId = "snakeyaml" }
}]

^{labels: library-update, old-version-remains, commit-count:1}

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 92.31%. Comparing base (0ec6197) to head (09d9ddb).

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #795   +/-   ##
=======================================
  Coverage   92.31%   92.31%           
=======================================
  Files         127      127           
  Lines        7440     7440           
  Branches      602      602           
=======================================
  Hits         6868     6868           
  Misses        572      572           

Flag	Coverage Δ
unittests	92.31% <ø> (ø)

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