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1. scTenifoldpy scTenifoldpy Public

   Python implementation of scTenifoldNet and scTenifoldKnk workflows.

   Python 62 9

2. biodbs biodbs Public

   Unified Python interface for biological databases

   Python 1 1

3. pipeGEM pipeGEM Public

   Python package for integrating omics data with genome-scale metabolic models and running comparative constraint-based metabolic analysis.

   Python 2

4. submission-nav submission-nav Public

   AI agent skill that helps researchers choose journals, check submission rules, and plan manuscript revisions from a PDF or DOCX draft.

   Python

5. ppi_net_builder ppi_net_builder Public

   Protein-Protein Interaction (PPI) network construction and analysis in Python

   Python 1

6. dox-ac16-omics-analysis dox-ac16-omics-analysis Public

   Python