This respository contains all of the code used to analyze snRNA-seq data from the study https://www.cell.com/cell/pdf/S0092-8674(21)01485-9.pdf.
The dataset can be explored and visualized at the Broad Institute's Single Cell Portal (SCP) here: https://singlecell.broadinstitute.org/single_cell/study/SCP1664/vision-dependent-specification-of-cell-types-and-function-in-the-developing-cortex#study-summary
All of the finalized datasets associated with the study can be found here: https://drive.google.com/drive/folders/1g7V-kulvz_J0BsKT4RH40z_xDpurFoOg?usp=sharing. Relevant metadata include "Sample", "Age", "Class", "Subclass", and "Type". Note that these h5ad files contain normalized, log-transformed data as described in the manuscript. If you are interested in raw counts, see the folder "Raw_Counts_Samples" at the above link.
Please contact salwan@berkeley.edu and kshekhar@berkeley.edu with any questions.