refactor: simplify around connector-first SIMIND adaptors#1

Merged

samdporter merged 14 commits intomainfrom

codex/simplify-repo

Mar 5, 2026

Commits on Mar 5, 2026

docker: preserve workspace file ownership during image build
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examples: fix projection plane selection and display orientation
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config: increase example SPECT projection count to 24
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refactor(core): collapse legacy simulator stack into connector-first core
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refactor(adaptors): route SIRF/STIR adaptors through python connector
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refactor(pytomography): remove adaptor wrappers around package system-matrix APIs
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docs: clarify connector-first scope and adaptor boundaries
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style: apply ruff formatting and resolve line-length lint
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docs: rewrite user-facing guidance and remove maintainer-oriented wording
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fix: address PR feedback on adaptor spacing, executor hardening, and tests
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fix(adaptors): support non-iterable grid spacing objects
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chore(branding): rebrand to py-smc and add SIMIND disclaimer
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chore(security): annotate validated subprocess call for sourcery
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refactor(security): build validated simind commands with static executables
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