Upgrade Python from 3.8 to 3.13

.github/workflows/ci-tests.yml

@@ -20,7 +20,7 @@ jobs:
     strategy:
       matrix:
         os: [ubuntu-latest, windows-latest]
-        python-version: [3.9, 3.11]
+        python-version: [3.13]
 
     steps:
     - uses: actions/checkout@v4

.github/workflows/pypi-publish.yml

@@ -18,7 +18,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v5
         with:
-          python-version: '3.11'
+          python-version: '3.13'
       - name: Build package
         run: |
           python -m pip install --upgrade pip

.pre-commit-config.yaml

@@ -18,7 +18,7 @@ repos:
     rev: v3.15.0
     hooks:
     - id: pyupgrade
-      args: [--py38-plus]
+      args: [--py313-plus]
 
   - repo: https://github.com/psf/black
     rev: 23.3.0

.python-version

@@ -0,0 +1 @@
+3.13.1

.readthedocs.yaml

@@ -9,7 +9,7 @@ version: 2
 build:
   os: ubuntu-22.04
   tools:
-    python: "3.10"
+    python: "3.13"
 
 # Build documentation in the docs/ directory with Sphinx
 sphinx:

README.md

@@ -122,7 +122,7 @@ effort more broadly,** please use citation [^1], which is provided below in BibT
 
 ### Requirements
 
-- Python 3.8-3.11 with pip.
+- Python 3.13 with pip.
 
 We strongly recommend using the Anaconda Python distribution and creating a new conda environment
 for OpenOA. You can download Anaconda through
@@ -139,7 +139,7 @@ After installing Anaconda (or alternative), create and activate a new conda envi
 name "openoa-env":
 
 ```bash
-conda create --name openoa-env python=3.10
+conda create --name openoa-env python=3.13
 conda activate openoa-env
 ```
 
@@ -175,8 +175,7 @@ is also allowed).
 - `all`: for the complete dependency stack
 
 > **Important**
-> If using Python 3.11, install `openoa` only, then reinstall adding the modifiers to reduce
-> the amount of time it takes for pip to resolve the dependency stack.
+> With Python 3.13, you can install `openoa` with any combination of modifiers directly.
 
 #### Common Installation Issues
 

openoa/utils/filters.py

@@ -103,7 +103,12 @@ def unresponsive_flag(
     flag = flag == 0
 
     # Need to flag preceding `threshold` values as well
-    flag = flag | np.any([flag.shift(-1 - i, axis=0) for i in range(threshold - 1)], axis=0)
+    shifts = [flag.shift(-1 - i, axis=0) for i in range(threshold - 1)]
+    if shifts:
+        any_result = shifts[0]
+        for shift in shifts[1:]:
+            any_result = any_result | shift
+        flag = flag | any_result
 
     # Return back a pd.Series if one was provided, else a pd.DataFrame
     return flag[col[0]] if to_series else flag

pyproject.toml

@@ -8,7 +8,7 @@ dynamic = ["version"]
 authors = [{name = "NREL PRUF OA Team", email = "openoa@nrel.gov"}]
 readme = {file = "README.md", content-type = "text/markdown"}
 description = "A package for collecting and assigning wind turbine metrics"
-requires-python = ">=3.8, <3.12"
+requires-python = ">=3.13"
 license = {file = "LICENSE.txt"}
 dependencies = [
     "scikit-learn>=1.0",
@@ -19,9 +19,8 @@ dependencies = [
     "numpy>=1.24",
     "pandas>=2.2",
     "pygam>=0.9.0",
-    "scipy>=1.7,<1.14",
-    "statsmodels>=0.11; python_version<'3.11'",
-    "statsmodels>=0.13.3; python_version=='3.11'",
+    "scipy>=1.7",
+    "statsmodels>=0.14.1",
     "tqdm>=4.28.1",
     "matplotlib>=3.6",
     "bokeh>=3.3",
@@ -50,10 +49,7 @@ classifiers = [  # https://pypi.org/classifiers/
     "Operating System :: OS Independent",
     "Programming Language :: Python",
     "Programming Language :: Python :: 3 :: Only",
-    "Programming Language :: Python :: 3.8",
-    "Programming Language :: Python :: 3.9",
-    "Programming Language :: Python :: 3.10",
-    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.13",
     "Topic :: Scientific/Engineering",
     "Topic :: Software Development :: Libraries :: Python Modules",
     "Typing :: Typed",
@@ -140,7 +136,7 @@ filterwarnings = [
 [tool.black]
 # https://github.com/psf/black
 line-length = 100
-target-version = ["py38", "py39", "py310"]
+target-version = ["py313"]
 include = '\.pyi?$'
 exclude = '''
 # A regex preceded with ^/ will apply only to files and directories
@@ -166,7 +162,7 @@ exclude = '''
 [tool.isort]
 # https://github.com/PyCQA/isort
 profile = "black"
-py_version = 39
+py_version = 313
 src_paths = ["isort", "test"]
 line_length = "100"
 length_sort = "True"

requirements-py38.txt

@@ -0,0 +1,25 @@
+scikit-learn>=1.0
+requests>=2.21.0
+eia-python>=1.22
+pyproj>=3.5
+shapely>=1.8
+numpy>=2.1.0
+pandas>=2.2.3
+pygam>=0.9.0
+scipy>=1.14
+statsmodels>=0.14.1
+tqdm>=4.28.1
+matplotlib>=3.8
+bokeh>=3.0
+attrs>=22.2
+pytz
+pyyaml
+tabulate
+ipython
+pre-commit
+black
+isort
+flake8
+flake8-docstrings
+pytest>=5.4.2
+pytest-cov>=2.8.1

runtime.txt

@@ -1 +1 @@
-python-3.9
+python-3.13

sphinx/getting_started/index.rst

@@ -33,8 +33,7 @@ Additional Dependencies
 -----------------------
 
 .. important::
-    If using Python 3.11, install ``openoa`` only, then reinstall adding the modifiers to reduce
-    the amount of time it takes for pip to resolve the dependency stack.
+    With Python 3.13, you can install ``openoa`` with any combination of modifiers directly.
 
 Whether installing from PyPI or source, any combination of the following can be used to install
 additional dependencies. For example, the examples requirements can be installed using

sphinx/getting_started/install.rst

@@ -32,8 +32,7 @@ at the same time with the following.
     pip install "OpenOA[develop]"
 
 .. important::
-    If using Python 3.11, install ``openoa`` only, then reinstall adding the modifiers to reduce
-    the amount of time it takes for pip to resolve the dependency stack.
+    With Python 3.13, you can install ``openoa`` with any combination of modifiers directly.
 
 Additional options:
 - `develop`: for linting, automated formatting, and testing

sphinx/index.md

@@ -72,7 +72,7 @@ For further information about the features and citations, please see the
 
 ## Installation
 
-Compatible with Python 3.8 through 3.11 with pip.
+Compatible with Python 3.13 with pip.
 
 We strongly recommend using the Anaconda Python distribution and creating a new conda environment
 for OpenOA. You can download Anaconda through
@@ -90,7 +90,7 @@ After installing Anaconda (or alternative), create and activate a new conda envi
 name "openoa-env":
 
 ```bash
-conda create --name openoa-env python=3.10
+conda create --name openoa-env python=3.13
 conda activate openoa-env
 ```
 

test/unit/test_timeseries_toolkit.py

@@ -145,8 +145,8 @@ def test_percent_nan(self):
         test_dict = {}
 
         # All should be float Series given PlantData requirements
-        test_dict["a"] = pd.Series([True, 1, 2, 1e5, np.Inf]).astype(float)
-        test_dict["b"] = pd.Series([False, np.nan, 2, 1e5, np.Inf]).astype(float)
+        test_dict["a"] = pd.Series([True, 1, 2, 1e5, np.inf]).astype(float)
+        test_dict["b"] = pd.Series([False, np.nan, 2, 1e5, np.inf]).astype(float)
         test_dict["c"] = pd.Series([np.nan, 1, 2, 1e5, np.nan]).astype(float)
 
         nan_values = {"a": 0.0, "b": 0.2, "c": 0.4}