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Pull requests: scverse/rustar-aligner

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Pull requests list

fix(stats): route reads exceeding --outFilterMultimapNmax to too_many_loci counter
#54 opened May 12, 2026 by pinin4fjords Contributor Loading…
6 tasks done
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fix(stitch): use sjdb_score in place of motif_score on annotated junctions
#52 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
1
fix: decode Gsj-region SA hits into split splice seeds
#51 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
1
1
fix(stats): route no-seeds-no-clusters reads to UnmappedReason::Other
#49 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
1
1
fix(sjdb): key SpliceJunctionDb in genome-absolute 0-based coordinates
#45 opened May 12, 2026 by pinin4fjords Contributor Loading…
6 tasks done
1
1
fix(output): move pass-1 SJ tab into <prefix>_STARpass1/SJ.out.tab
#44 opened May 12, 2026 by pinin4fjords Contributor Loading…
6 tasks done
1
1
feat(bam): emit XS:A: strand tag when --outSAMstrandField intronMotif
#43 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
1
1
fix(bam): emit SAM-spec NM:i: tag distinct from STAR-internal nM:i:
#42 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
1
1
fix(transcriptome-bam): populate mate fields on paired-end records
#41 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
1
1
feat(bam): populate @PG header with PN/VN/CL fields
#40 opened May 12, 2026 by pinin4fjords Contributor Loading…
6 tasks done
1
1
fix(transcriptome-bam): write per-record RG:Z: tag matching @RG header
#39 opened May 12, 2026 by pinin4fjords Contributor Loading…
6 tasks done
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1
fix(bam): subtract Phred+33 offset from QUAL before writing to BAM
#38 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
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fix(chimeric): create output parent directory before writing
#37 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
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feat(params): accept --limitGenomeGenerateRAM for STAR CLI compatibility
#36 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
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2
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