Refactor CI pipeline and update to latest Apptainers#16
Closed
cokelaer wants to merge 20 commits into
Closed
Conversation
- refactorise the code to make it more readable - update CI
Update pipeline to set singularity
fix apptainer CI fix typo
update apptainers
Fixes CI apptainer
update pipeline to use latest apptainers
Use sequana_wrappers from the config file
Use new sequana_pipetools framework(click)
hotfix to use on HPC clusters
Fix error reporting issue when gff file is missing
Not up to standards ⛔
|
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.