Segmenting MRI images using 2D Unet#142

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NicMarchant wants to merge 24 commits into

shakes76:topic-recognitionfrom

NicMarchant:topic-recognition

Commits on Oct 7, 2024

Modified dataset.py to add the dataloader for the three keras_slices datasets
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added the loading of the segmented data to dataset.py as previously it was just the unsegmented data, added import calls to train.py to access each dataset
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Commits on Oct 10, 2024

Added encoder, bottleneck, decoder and unet functions to modules.py.
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Tested the functionality of the model with a subset of data.
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Adding files to rangpur to test model. using 50 epochs and a batch size of 32
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Commits on Oct 11, 2024

Added loss, accuracy and dice score variables to store the results of the training,
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Commits on Oct 16, 2024

Modified train to use Binary cross entropy, this allows it to run on RANGPUR.
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Commits on Oct 21, 2024

Added code to predict.py to show the first 5 original images,
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Cleaned imports and added dice
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Modifying training.py for accuracy
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Sorted data and changed folder
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Added a learning rate scheduler to help dice score
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Commits on Oct 22, 2024

Changed to combined loss function better accuracy
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Commits on Oct 26, 2024