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1. uclahs-cds/pipeline-call-sSNV uclahs-cds/pipeline-call-sSNV Public

   Nextflow pipeline to identify the somatic single nucleotide variants (sSNVs) by comparing a pair of tumor/normal samples.

   Nextflow 6 3

2. uclahs-cds/pipeline-generate-SQC-BAM uclahs-cds/pipeline-generate-SQC-BAM Public

   Nextflow pipeline to generate sample level QC data from BAM files

   Groovy

3. uclahs-cds/pipeline-call-gSNP uclahs-cds/pipeline-call-gSNP Public

   Nextflow pipeline to call germline short variants using GATK

   Nextflow 1 2

4. uclahs-cds/metapipeline-DNA uclahs-cds/metapipeline-DNA Public

   Nextflow pipeline to convert BAM to FASTQ, align, perform QC, assess targeted coverage, call gSNP, call sSNV, call mtSNV, call SVs, call sCNA, and perform subclonal reconstruction

   Groovy 17 1