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1. single-cell-best-practices single-cell-best-practices Public

   https://www.sc-best-practices.org

   Jupyter Notebook 1.2k 278

2. scvelo scvelo Public

   RNA Velocity generalized through dynamical modeling

   Python 507 114

3. scarches scarches Public

   Reference mapping for single-cell genomics

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4. scib scib Public

   Benchmarking analysis of data integration tools

   Python 427 76

5. ehrapy ehrapy Public

   Electronic Health Record Analysis with Python.

   Python 355 50

6. moscot moscot Public

   Multi-omic single-cell optimal transport tools

   Python 215 16