Python script(s) to calculate and plot transposable element annotations in GFF3 files, specifically generated by TEdenovo and TEannot outputs (Flutre et al., 2011; https://urgi.versailles.inra.fr/Tools/REPET).
Dependencies:
Example Usage:
$ python classification_te_coverage.py ./test_data/super_3007.gff3 sbi1
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"sbi1" is the project_name from TEannot.cfg. This should write a comma separated file, "super_3007_all_te_bp_coverage_data.txt", to the current working directory.