nnodely update

.github/workflows/codecov.yml

@@ -0,0 +1,41 @@
+name: Coverage (Codecov)
+
+on:
+  push:
+    branches: [ "main", "develop" ]
+  pull_request:
+    branches: [ "main", "develop" ]
+
+jobs:
+  test:
+    name: Run tests and upload coverage
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.10"
+
+      - name: Install pandoc
+        uses: pandoc/actions/setup@v1
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install coverage
+          python -m pip install sphinx myst_parser sphinx-rtd-theme nbsphinx pandoc jupyter jupyterlab
+          pip install -e .
+
+      - name: Tests with coverage
+        run: |
+          coverage run --omit='./results/*','./docs/*','./examples/*' -m unittest discover tests
+          coverage xml -o coverage.xml
+
+      - name: Upload results to Codecov
+        uses: codecov/codecov-action@v5
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          files: coverage.xml

.github/workflows/run-tests.yml

@@ -26,11 +26,13 @@ jobs:
       uses: actions/setup-python@v3
       with:
         python-version: ${{ matrix.python-version }}
+    - name: Install pandoc
+      uses: pandoc/actions/setup@v1
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
         python -m pip install flake8 pytest 
-        python -m pip install sphinx myst_parser sphinx-rtd-theme
+        python -m pip install sphinx myst_parser sphinx-rtd-theme nbsphinx pandoc jupyter jupyterlab
         pip install -e .
     - name: Lint with flake8
       run: |
@@ -41,3 +43,9 @@ jobs:
     - name: Test with pytest
       run: |
         pytest
+
+
+
+
+
+

.gitignore

@@ -70,6 +70,7 @@ instance/
 
 # Sphinx documentation
 docs/_build/
+docs/out_docs/
 
 # PyBuilder
 .pybuilder/

.readthedocs.yaml

@@ -1,17 +1,17 @@
 version: 2
 
 build:
-  os: ubuntu-20.04
+  os: ubuntu-22.04
   tools:
-    python: "3.10"
+    python: "3.12"
 #  jobs:
 #    pre_build:
 #      # - sphinx-apidoc -o docs/_autodoc nnodely mplplots
 #      - sphinx-apidoc -o docs/_autodoc nnodely
 
 sphinx:
   configuration: docs/conf.py
-  fail_on_warning: true
+  fail_on_warning: false
 
 formats:
   - pdf