diffbind

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challagandla / oracle-chip-seq

ChIP-seq analysis: QC and contamination screening, Bowtie2 alignment, MACS2 broad peaks, DiffBind, and monaLisa/JASPAR motif enrichment, with a MultiQC report.

bioinformatics snakemake genomics computational-biology multiqc chip-seq histone-modifications epigenomics peak-calling deeptools diffbind oracle-platform motif-enrichment

Updated Jul 8, 2026
Python

Zaki-1052 / cleave

Star

Self-hosted CUT&RUN bioinformatics platform for the Ferguson Lab at UCSD. Replicates CUTANA Cloud and extends it with trimming, SEACR/MACS2, DiffBind, custom heatmaps, Pearson correlation, & Roman normalization. React + FastAPI + PostgreSQL on EC2.

react bioinformatics pipeline genomics postgresql igv chromatin epigenomics peak-calling fastapi diffbind cut-and-run

Updated Jun 27, 2026
Python

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