e-utilities

Here are 2 public repositories matching this topic...

cyanheads / pubmed-mcp-server

MCP server for the NCBI E-utilities API. Search PubMed, fetch article metadata, generate citations, explore MeSH terms, and discover related research. Runs over stdio or HTTP. Deployable to Cloudflare Workers.

typescript mcp pubmed citations mesh ncbi biomedical ai-agents cloudflare-workers ai-tools pubmed-api model-context-protocol mcp-server e-utilities

Updated Mar 5, 2026
TypeScript

SidSin0809 / phyloseq-taxid-resolver

Star

Batch-resolve NCBI Taxonomy IDs (TaxIDs) from a phyloseq-style taxonomy CSV using Biopython Entrez, with a live tqdm progress bar, caching, resume, safe partial writes, and optional species-rank verification.

python bioinformatics metagenomics biopython entrez ncbi-taxonomy command-line-tool taxid microbiome ncbi tqdm phyloseq refseq e-utilities

Updated Sep 18, 2025
Python

Improve this page

Add a description, image, and links to the e-utilities topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the e-utilities topic, visit your repo's landing page and select "manage topics."

Learn more

Provide feedback

Saved searches

Use saved searches to filter your results more quickly