loop-calling

Here are 2 public repositories matching this topic...

challagandla / oracle-hichip-seq

HiChIP-seq analysis from paired-end reads: contact matrices, peak-anchored loop calling, loop QC, differential loops, visualization, and graph export for downstream analysis.

bioinformatics snakemake genomics computational-biology cooler 3d-genome chromatin hichip epigenomics loop-calling oracle-platform fithichip

Updated Jul 8, 2026
Python

ccarloscr / metaloops-toolkit

Star

Toolkit providing a compatibility layer for running metaloops-22 from Gambetta lab

hi-c slurm-cluster loop-calling metaloops

Updated May 12, 2026
Shell

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