#

msa-transformer

Here are 3 public repositories matching this topic...

elttaes / Revisiting-PLMs

Exploring Evolution-aware & free protein language models as protein function predictors

benchmark pytorch contact-prediction stability multiple-sequence-alignment protein-annotation function-prediction protein-classification alphafold protein-language-model alphafold2 fitness-prediction zero-shot-prediction msa-construction msa-transformer esm1b remote-homology-detection metal-ion-binding

Updated Sep 28, 2024
Python

Cassie818 / MsaPhylo

Learning the language of phylogeny with MSA Transformer

epistasis protein-evolution interpretable-machine-learning protein-language-model msa-transformer phylogenetic-reconstruction

Updated Feb 28, 2026
Python

shruti-sivakumar / MSA-Comparative-Study

Benchmarking 6 MSA tools (Clustal Omega, MUSCLE, MAGUS, M-Coffee, MSA Probs, MSA Transformer) across BAliBASE, OXBench & PREFAB datasets.

benchmarking bioinformatics deep-learning computational-biology muscle multiple-sequence-alignment protein-alignment clustal-omega msa-transformer balibase

Updated Feb 19, 2026

Improve this page

Add a description, image, and links to the msa-transformer topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the msa-transformer topic, visit your repo's landing page and select "manage topics."