SPARC CCF Multi-omics analysis

Multi-omics data integration using similarity network fusion (SNF) and graph neural networks for patient stratification

Reproducible TCGA multi-omics ML pipeline for MSI status prediction, comparing single-omics baselines, early/late fusion, unsupervised clustering, and feature-level explainability.

Network-based stratification of allele-specific expression reveals patient subgroups in Huntington's disease

An end-to-end translational transcriptomics pipeline integrating TCGA and GTEx V10 cohorts to stratify mixed-phenotype Renal Cell Carcinoma (RCC) and evaluate candidate biomarker target-safety windows for drug discovery.

Statistical genetics pipeline for patient stratification and clinical trial enrichment using polygenic risk scores.