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…he hmde_estimates S3 class object. Added element to hmde_estimates object that gives the used prior parameters based on the check_prior_par values output by the stan fit.
…_estimates object. Changed plot_de_pieces and plot_obs_est_inds functions to check for correct class. Changed run function to properly check for correct class of model_template object.
…ingle or multi-individual models.
… plotted regardless of the number requested.
…it object as summary info. Updated the print and summary functions to output meta data. Corrected errors in the plot functions and added titles.
…ting for hmde_estimates constructor function.
…dated the data input function for hmde_data_template.
…to not change the class of the returned object.
… class, along with testing for those functions. Updated documentation.
…servation data and changing priors.
…ated tests to include it.
…o that the second one will take obs_data as default, followed by prior_pars.
… hmde_template constructor. Added n_ind parameters to the multi-ind model templates. Added unit testing for each model run.
…f testing for models to reflect new workflow.
…d vignettes to use new workflow.
…parameter names rather than relying on running hmde_model_pars.
…result reproduction.
…dded parameter names to the data object.
…coevo/hmde into s4-methods-implementation Merging testing correction.
… hmde_obs_est_inds function in vignettes.
…es for Rhat extraction, fixed documentation of arguments for show, print, summary, plot in hmde_estimates.
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Re-structured package to use an S4 object-oriented programming paradigm.
The re-shaped package uses hmde_data_template and hmde_estimates class objects in a refined workflow that requires fewer basic steps to implement the same underlying models. In particular, the hmde_estimates object has a much better structure for preserving information about the stanfit, including runtime and the priors used.