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feat: protein distance geometry essay + fix project card #22

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feat: protein distance geometry essay + fix project card #22

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c59453e
feat: add protein distance geometry essay and fix project card
viniciusdc Apr 30, 2026
35ac61a
refactor: move protein essay to writing/ and update back link
viniciusdc Apr 30, 2026
c406129
feat: add KaTeX math rendering and convert protein essay to LaTeX
viniciusdc Apr 30, 2026
9ff9779
chore: add pixi environment and route make targets through it
viniciusdc Apr 30, 2026
af826de
chore: ignore .pixi/ environment directory
viniciusdc Apr 30, 2026
303d92f
feat: add image lightbox to article layout
viniciusdc Apr 30, 2026
92ff729
fix: increase lightbox image max size to 1100px / 88vh
viniciusdc Apr 30, 2026
9f118c6
chore: add lightbox and LaTeX command words to cspell
viniciusdc May 11, 2026
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1 change: 1 addition & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -27,3 +27,4 @@ pnpm-debug.log*
src/pages/writing/*/
src/pages/projects/*/
public/figures/
.pixi/
16 changes: 8 additions & 8 deletions Makefile
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@@ -1,26 +1,26 @@
.PHONY: install dev build preview check banner post

# ── npm ───────────────────────────────────────────────────────────────────────
# ── environment ───────────────────────────────────────────────────────────────

install:
npm install
pixi run install

dev:
npm run dev
pixi run dev

build:
npm run build
pixi run build

preview:
npm run preview
pixi run preview

check:
npm run check
pixi run check

# ── assets ────────────────────────────────────────────────────────────────────

banner:
node scripts/gen-banner.mjs
pixi run banner

# ── content ───────────────────────────────────────────────────────────────────
#
Expand All @@ -33,4 +33,4 @@ ifndef TITLE
$(error TITLE is required. make post TITLE="my title" TAG="debugging" TYPE=note)
endif
@chmod +x scripts/new-post.sh
@scripts/new-post.sh "$(TITLE)" "$(or $(TAG),field note)" "$(or $(TYPE),note)"
@pixi run node scripts/new-post.sh "$(TITLE)" "$(or $(TAG),field note)" "$(or $(TYPE),note)"
4 changes: 3 additions & 1 deletion astro.config.mjs
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Expand Up @@ -3,10 +3,12 @@ import { defineConfig } from 'astro/config';
import mdx from '@astrojs/mdx';
import tailwindcss from '@tailwindcss/vite';
import path from 'path';
import remarkMath from 'remark-math';
import rehypeKatex from 'rehype-katex';

export default defineConfig({
site: 'https://viniciusdc.github.io',
integrations: [mdx()],
integrations: [mdx({ remarkPlugins: [remarkMath], rehypePlugins: [rehypeKatex] })],
devToolbar: { enabled: false },
vite: {
plugins: [tailwindcss()],
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8 changes: 5 additions & 3 deletions cspell.json
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Expand Up @@ -10,7 +10,7 @@
"keycloak", "oidc", "oauth", "saml", "jwt", "jwks",
"fastapi", "pydantic", "scrapy", "uvicorn",
"vinicius", "cerutti", "Ceture", "viniciusdc", "Catarina", "UFSC",
"astro", "tailwind", "shadcn", "fontsource", "lhci",
"astro", "tailwind", "shadcn", "fontsource", "lhci", "lightbox",
"woff", "woff2", "oklch", "rgb", "rgba", "hsl",
"clamp", "minmax", "prefers",
"nebari", "jmespath", "snistrict",
Expand Down Expand Up @@ -39,9 +39,11 @@
"semidefinite", "semidefiniteness",
"Barzilai", "Borwein",
"nonmonotone", "GLL",
"Hessian", "quasi-Newton",
"Hessian", "quasi-Newton", "eigencomponents",
"mathbb", "mathbf", "mathcal", "bigl", "bigr",
"NMR", "PDB", "crystallography",
"Gram"
"Gram", "Schoenberg", "Wüthrich", "ChimeraX", "PIBIC", "RMSD", "MDE", "RCSB",
"PGDm", "Gonçalves", "Birgin", "Martínez", "Raydan", "UCSF"
],
"ignorePaths": [
"node_modules/**",
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