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cc93891
notes
hasindu2008 Feb 27, 2026
7fdcb11
add --secondary flag and view test
imsuneth Feb 27, 2026
b3fbed9
add --include-alt-alleles flag
imsuneth Mar 2, 2026
c534556
fix test.sh
imsuneth Mar 2, 2026
c07823a
add warning for untested mod_code and context combinations
imsuneth Mar 2, 2026
7a9e543
add changes related to next version
imsuneth Mar 2, 2026
b6c2a32
update notes.md
imsuneth Mar 2, 2026
cf705db
update notes
imsuneth Mar 3, 2026
551c8e0
update notes
imsuneth Mar 3, 2026
01f8428
update readme
imsuneth Mar 3, 2026
6aadc29
add new test cases for freq
imsuneth Mar 3, 2026
90c2ef9
fix test error
imsuneth Mar 3, 2026
e2c3b9c
fix compare.py script to use python3
imsuneth Mar 3, 2026
005d901
fix python3 not found issue
imsuneth Mar 3, 2026
0f0f6ed
fix python3 not found issue
imsuneth Mar 3, 2026
270ac47
fix python3 not found issue in ubuntu arm
imsuneth Mar 3, 2026
6047018
add --skip-supplementary option
imsuneth Mar 6, 2026
6f399f3
minor fix to base idx lookup
imsuneth Mar 6, 2026
d26fcff
upadate usage in readme
imsuneth Mar 6, 2026
3f1f1fc
new prob conversion in view subtool
imsuneth Mar 9, 2026
dc18768
rename --include-alt-alleles to --include-non-ref
imsuneth Mar 9, 2026
44833e9
new prob conversion in view subtools fix
imsuneth Mar 10, 2026
f36aad9
hide --include-non-ref option temporarily
imsuneth Mar 10, 2026
47de3dc
update readme
imsuneth Mar 10, 2026
7b367b2
add compare scripts for debugging
imsuneth Mar 10, 2026
9ba8a60
update notes.md
imsuneth Mar 11, 2026
7e35129
docs
hasindu2008 Mar 11, 2026
afac070
update
hasindu2008 Mar 11, 2026
31a0d50
update README and notes
imsuneth Mar 13, 2026
aa735dc
new prob conversion in freq subtool
imsuneth Mar 13, 2026
27841b5
update notes
imsuneth Mar 13, 2026
35cbb20
remove unwanted file
imsuneth Mar 13, 2026
d323490
fix ml index mismatch error
imsuneth Mar 13, 2026
7953da1
add tests for rna_m5C_2OmeC_inosine_m6A_2OmeA_pseU_2OmeU_2OmeG
imsuneth Mar 13, 2026
cce4c33
Merge branch 'dev' of https://github.com/warp9seq/minimod into dev
imsuneth Mar 13, 2026
34dd3d5
rename --secondary to --allow-secondary
imsuneth Mar 16, 2026
3ded464
clean tests. remove unnecessary files - no_supps and their outputs
imsuneth Mar 16, 2026
f7f2ed7
add --allow-secondary and --skip-supplementary in summary subtool
imsuneth Mar 17, 2026
408997d
update readme
imsuneth Mar 17, 2026
9a15045
direct freq comparison with modkit and freq.sh, update test scripts
imsuneth Mar 18, 2026
cde1d19
fix script permissions
imsuneth Mar 18, 2026
f670a53
fix compare_freq_mmtsv_scripttsv.sh
imsuneth Mar 19, 2026
f0a4de5
update c-cpp.yml
imsuneth Mar 19, 2026
e9bf9cc
add debug logs in test.sh
imsuneth Mar 19, 2026
8b529a6
fix test failures
imsuneth Mar 19, 2026
c44fde6
fix freq.sh
imsuneth Mar 19, 2026
15a9bb6
fix compare freq script
imsuneth Mar 19, 2026
a6cc85c
osx14 issue - add debug logs
imsuneth Mar 19, 2026
c163bb3
osx14 issue - fix freq.sh. to support bash<4
imsuneth Mar 19, 2026
746ee70
Update notes.md
hasindu2008 Mar 20, 2026
513157b
update notes.md
imsuneth Mar 20, 2026
0698004
Merge branch 'dev' of https://github.com/warp9seq/minimod into dev
imsuneth Mar 20, 2026
9e300dc
update notes.md
imsuneth Mar 20, 2026
359062f
update notes.md
imsuneth Mar 20, 2026
d9ff1ae
update notes.md
imsuneth Mar 20, 2026
bb8b70a
update notes.md
imsuneth Mar 20, 2026
c79a390
update notes.md
imsuneth Mar 20, 2026
95d5b65
update notes.md, change compare scripts tolerance
imsuneth Mar 20, 2026

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