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@xomicsdatascience

Multiomics + Data Science Lab

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  1. AttentionSmithy AttentionSmithy Public

    Modular toolkit for rapidly building and customizing transformer architectures.

    Python 8 3

  2. transcriptome-proteome-nas-manubot transcriptome-proteome-nas-manubot Public

    HTML 5

  3. zoDIAq zoDIAq Public

    Cosine Similarity Optimization for DIA qualitative and quantitative analysis

    Python 4 4

  4. articles-to-code articles-to-code Public

    On-Demand Generation of Core Algorithms from Scientific Publications

    Jupyter Notebook 3

  5. ProteomicsAnalyzer ProteomicsAnalyzer Public

    Vibe coded proteomic data analysis streamlit app

    Python 3

  6. ClaudeCode_with_Azure ClaudeCode_with_Azure Public

    Instructions for getting Claude Code to work using models deployed on Azure.

    2

Repositories

Showing 10 of 38 repositories
  • scTransient_notebooks Public

    Notebooks for the analysis of data related to the scTransient publication.

    xomicsdatascience/scTransient_notebooks’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 6, 2026
  • full_dia Public

    Full-DIA is an open source software for diaPASEF data analysis that leverages deep learning to improve proteome coverage, quantitative accuracy and analysis speed. Most notably, Full-DIA is the first to automatically generate a missing-value-free protein matrix under global FDR control.

    xomicsdatascience/full_dia’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 0 Updated Feb 4, 2026
  • generation_of_iNeurons Public

    Extended NGN2 Expression in iPSCs Dramatically Enhances Purity of Neuronal Cultures

    xomicsdatascience/generation_of_iNeurons’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jan 30, 2026
  • xtracer Public

    Converting PAMAF .mbi data to pseudo-MS/MS files by untargeted methods.

    xomicsdatascience/xtracer’s past year of commit activity
    Python 0 0 0 0 Updated Jan 15, 2026
  • Retinal_Alzheimer_Prediction Public

    Code related to the prediction of Alzheimer's disease and related measures.

    xomicsdatascience/Retinal_Alzheimer_Prediction’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 1 0 Updated Dec 22, 2025
  • scTransient Public

    Detection of transient events in single-cell data.

    xomicsdatascience/scTransient’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Dec 19, 2025
  • ClaudeCode_with_Azure Public

    Instructions for getting Claude Code to work using models deployed on Azure.

    xomicsdatascience/ClaudeCode_with_Azure’s past year of commit activity
    2 GPL-3.0 0 0 0 Updated Dec 17, 2025
  • ProteomicsAnalyzer-Data Public

    Data to accompany the proteomics-analyzer example vibe coded application

    xomicsdatascience/ProteomicsAnalyzer-Data’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 21, 2025
  • ProteomicsAnalyzer Public

    Vibe coded proteomic data analysis streamlit app

    xomicsdatascience/ProteomicsAnalyzer’s past year of commit activity
    Python 3 0 0 0 Updated Oct 10, 2025
  • SMAD-project Public
    xomicsdatascience/SMAD-project’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 20, 2025
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