GEOPY-2274: update scikit-learn to >=1.5.0 addressing potential vulnerability

environments/env-python-3.10.yml

@@ -1,3 +1,8 @@
 dependencies:
   - python=3.10.*
   - pip
+  # reuse MKL (forced by simpeg/pydiso) for BLAS implementation:
+  # no need to use extra disk space for the default OpenBLAS.
+  - libblas=*=*mkl # [unix]
+  # Note: cannot apply to Windows since llvm-openmp (brought by Mumps) rejects intel-openmp
+  #        (as of today, "libblas=*=*mkl" has no implementation with llvm-openmp)

environments/env-python-3.11.yml

@@ -1,3 +1,8 @@
 dependencies:
   - python=3.11.*
   - pip
+  # reuse MKL (forced by simpeg/pydiso) for BLAS implementation:
+  # no need to use extra disk space for the default OpenBLAS.
+  - libblas=*=*mkl # [unix]
+  # Note: cannot apply to Windows since llvm-openmp (brought by Mumps) rejects intel-openmp
+  #        (as of today, "libblas=*=*mkl" has no implementation with llvm-openmp)

environments/env-python-3.12.yml

@@ -1,3 +1,8 @@
 dependencies:
   - python=3.12.*
   - pip
+  # reuse MKL (forced by simpeg/pydiso) for BLAS implementation:
+  # no need to use extra disk space for the default OpenBLAS.
+  - libblas=*=*mkl # [unix]
+  # Note: cannot apply to Windows since llvm-openmp (brought by Mumps) rejects intel-openmp
+  #        (as of today, "libblas=*=*mkl" has no implementation with llvm-openmp)

environments/py-3.10-linux-64-dev.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: 7b2bb2835665234d0ef442f0e4a4c9717b61f9a50ae298c50cf9cae2e9369ece
+# input_hash: aa70c6c517bbe8472b7de3ce4e8d391ca7e1d86e6bfe0e2a4e53e756c6e8388b
 
 channels:
   - conda-forge
@@ -10,9 +10,9 @@ dependencies:
   - accessible-pygments=0.0.5=pyhd8ed1ab_1
   - alabaster=0.7.16=pyhd8ed1ab_0
   - annotated-types=0.7.0=pyhd8ed1ab_1
-  - anyio=4.9.0=pyh29332c3_0
+  - anyio=4.10.0=pyhe01879c_0
   - argon2-cffi=25.1.0=pyhd8ed1ab_0
-  - argon2-cffi-bindings=21.2.0=py310ha75aee5_5
+  - argon2-cffi-bindings=25.1.0=py310h7c4b9e2_0
   - arrow=1.3.0=pyhd8ed1ab_1
   - asciitree=0.3.3=py_2
   - astroid=3.3.11=py310hff52083_0
@@ -29,23 +29,23 @@ dependencies:
   - brotli-python=1.1.0=py310hf71b8c6_3
   - bzip2=1.0.8=h4bc722e_7
   - c-ares=1.34.5=hb9d3cd8_0
-  - ca-certificates=2025.7.14=hbd8a1cb_0
+  - ca-certificates=2025.8.3=hbd8a1cb_0
   - cached-property=1.5.2=hd8ed1ab_1
   - cached_property=1.5.2=pyha770c72_1
-  - certifi=2025.7.14=pyhd8ed1ab_0
+  - certifi=2025.8.3=pyhd8ed1ab_0
   - cffi=1.17.1=py310h8deb56e_0
   - charset-normalizer=3.4.2=pyhd8ed1ab_0
   - click=8.2.1=pyh707e725_0
   - cloudpickle=3.1.1=pyhd8ed1ab_0
   - colorama=0.4.6=pyhd8ed1ab_1
   - comm=0.2.3=pyhe01879c_0
   - contourpy=1.3.2=py310h3788b33_0
-  - coverage=7.10.1=py310h3406613_0
+  - coverage=7.10.2=py310h3406613_0
   - cycler=0.12.1=pyhd8ed1ab_1
   - cytoolz=1.0.1=py310ha75aee5_0
   - dask-core=2025.3.0=pyhd8ed1ab_0
   - dataclasses=0.8=pyhc8e2a94_3
-  - debugpy=1.8.15=py310h25320af_0
+  - debugpy=1.8.16=py310h25320af_0
   - decorator=5.2.1=pyhd8ed1ab_0
   - defusedxml=0.7.1=pyhd8ed1ab_0
   - dill=0.4.0=pyhd8ed1ab_0
@@ -69,13 +69,12 @@ dependencies:
   - httpcore=1.0.9=pyh29332c3_0
   - httpx=0.28.1=pyhd8ed1ab_0
   - hyperframe=6.1.0=pyhd8ed1ab_0
-  - icu=75.1=he02047a_0
   - idna=3.10=pyhd8ed1ab_1
   - imagesize=1.4.1=pyhd8ed1ab_0
   - importlib-metadata=8.7.0=pyhe01879c_1
   - importlib_metadata=8.7.0=h40b2b14_1
   - iniconfig=2.0.0=pyhd8ed1ab_1
-  - ipykernel=6.30.0=pyh82676e8_0
+  - ipykernel=6.30.1=pyh82676e8_0
   - ipython=8.37.0=pyh8f84b5b_0
   - ipython_genutils=0.2.0=pyhd8ed1ab_2
   - ipywidgets=7.8.5=pyhd8ed1ab_0
@@ -111,11 +110,11 @@ dependencies:
   - ld_impl_linux-64=2.44=h1423503_1
   - lerc=4.0.0=h0aef613_1
   - libaec=1.1.4=h3f801dc_0
-  - libblas=3.9.0=32_hfdb39a5_mkl
+  - libblas=3.9.0=33_hfdb39a5_mkl
   - libbrotlicommon=1.1.0=hb9d3cd8_3
   - libbrotlidec=1.1.0=hb9d3cd8_3
   - libbrotlienc=1.1.0=hb9d3cd8_3
-  - libcblas=3.9.0=32_h372d94f_mkl
+  - libcblas=3.9.0=33_h372d94f_mkl
   - libcurl=8.14.1=h332b0f4_0
   - libdeflate=1.24=h86f0d12_0
   - libdlf=0.3.0=pyhd8ed1ab_1
@@ -125,34 +124,34 @@ dependencies:
   - libffi=3.4.6=h2dba641_1
   - libfreetype=2.13.3=ha770c72_1
   - libfreetype6=2.13.3=h48d6fc4_1
-  - libgcc=15.1.0=h767d61c_3
-  - libgcc-ng=15.1.0=h69a702a_3
-  - libgfortran=15.1.0=h69a702a_3
-  - libgfortran5=15.1.0=hcea5267_3
-  - libhwloc=2.11.2=default_h3d81e11_1002
+  - libgcc=15.1.0=h767d61c_4
+  - libgcc-ng=15.1.0=h69a702a_4
+  - libgfortran=15.1.0=h69a702a_4
+  - libgfortran5=15.1.0=hcea5267_4
+  - libhwloc=2.12.1=default_h3d81e11_1000
   - libiconv=1.18=h4ce23a2_1
   - libjpeg-turbo=3.1.0=hb9d3cd8_0
-  - liblapack=3.9.0=32_hc41d3b0_mkl
+  - liblapack=3.9.0=33_hc41d3b0_mkl
   - liblzma=5.8.1=hb9d3cd8_2
   - libnghttp2=1.64.0=h161d5f1_0
   - libnsl=2.0.1=hb9d3cd8_1
   - libpng=1.6.50=h421ea60_1
   - libscotch=7.0.6=hea33c07_1
   - libsodium=1.0.20=h4ab18f5_0
   - libspatialindex=2.0.0=he02047a_0
-  - libsqlite=3.50.3=hee844dc_1
+  - libsqlite=3.50.4=h0c1763c_0
   - libssh2=1.11.1=hcf80075_0
-  - libstdcxx=15.1.0=h8f9b012_3
-  - libstdcxx-ng=15.1.0=h4852527_3
+  - libstdcxx=15.1.0=h8f9b012_4
+  - libstdcxx-ng=15.1.0=h4852527_4
   - libtiff=4.7.0=hf01ce69_5
   - libuuid=2.38.1=h0b41bf4_0
   - libwebp-base=1.6.0=hd42ef1d_0
   - libxcb=1.17.0=h8a09558_0
   - libxcrypt=4.4.36=hd590300_1
-  - libxml2=2.13.8=h4bc477f_0
+  - libxml2=2.13.8=h2cb61b6_1
   - libzlib=1.3.1=hb9d3cd8_2
   - linkify-it-py=2.0.3=pyhd8ed1ab_1
-  - llvm-openmp=20.1.8=h4922eb0_0
+  - llvm-openmp=20.1.8=h4922eb0_1
   - locket=1.0.0=pyhd8ed1ab_0
   - markdown-it-py=2.2.0=pyhd8ed1ab_0
   - markupsafe=3.0.2=py310h89163eb_1
@@ -163,7 +162,7 @@ dependencies:
   - mdurl=0.1.2=pyhd8ed1ab_1
   - metis=5.1.0=hd0bcaf9_1007
   - mistune=3.1.3=pyh29332c3_0
-  - mkl=2024.2.2=ha770c72_16
+  - mkl=2024.2.2=ha770c72_17
   - msgpack-python=1.1.1=py310h3788b33_0
   - mumps-include=5.7.3=h82cca05_10
   - mumps-seq=5.7.3=h06cbf8f_10
@@ -177,12 +176,12 @@ dependencies:
   - nbformat=5.10.4=pyhd8ed1ab_1
   - ncurses=6.5=h2d0b736_3
   - nest-asyncio=1.6.0=pyhd8ed1ab_1
-  - notebook=7.4.4=pyhd8ed1ab_0
+  - notebook=7.4.5=pyhd8ed1ab_0
   - notebook-shim=0.2.4=pyhd8ed1ab_1
   - numcodecs=0.13.1=py310h5eaa309_0
   - numpy=1.26.4=py310hb13e2d6_0
-  - openjpeg=2.5.3=h5fbd93e_0
-  - openssl=3.5.1=h7b32b05_0
+  - openjpeg=2.5.3=h55fea9a_1
+  - openssl=3.5.2=h26f9b46_0
   - overrides=7.7.0=pyhd8ed1ab_1
   - packaging=25.0=pyh29332c3_1
   - pandas=2.3.1=py310h0158d43_0
@@ -193,7 +192,7 @@ dependencies:
   - pexpect=4.9.0=pyhd8ed1ab_1
   - pickleshare=0.7.5=pyhd8ed1ab_1004
   - pillow=10.3.0=py310hebfe307_1
-  - pip=25.1.1=pyh8b19718_0
+  - pip=25.2=pyh8b19718_0
   - platformdirs=4.3.8=pyhe01879c_0
   - pluggy=1.6.0=pyhd8ed1ab_0
   - prometheus_client=0.22.1=pyhd8ed1ab_0
@@ -225,7 +224,7 @@ dependencies:
   - python_abi=3.10=8_cp310
   - pytz=2025.2=pyhd8ed1ab_0
   - pyyaml=6.0.2=py310h89163eb_2
-  - pyzmq=27.0.0=py310h71f11fc_0
+  - pyzmq=27.0.1=py310h9a5fd63_0
   - readline=8.2=h8c095d6_2
   - readthedocs-sphinx-ext=2.2.5=pyhd8ed1ab_1
   - referencing=0.36.2=pyh29332c3_0
@@ -235,7 +234,7 @@ dependencies:
   - rfc3987-syntax=1.1.0=pyhe01879c_1
   - rpds-py=0.26.0=py310hbcd0ec0_0
   - rtree=1.2.0=py310haf1e407_1
-  - scikit-learn=1.5.2=py310h27f47ee_1
+  - scikit-learn=1.6.1=py310h27f47ee_0
   - scipy=1.14.1=py310hfcf56fc_2
   - send2trash=1.8.3=pyh0d859eb_1
   - setuptools=80.9.0=pyhff2d567_0
@@ -264,7 +263,7 @@ dependencies:
   - sqlalchemy=2.0.42=py310h7c4b9e2_0
   - stack_data=0.6.3=pyhd8ed1ab_1
   - tabulate=0.9.0=pyhd8ed1ab_2
-  - tbb=2021.13.0=hceb3a55_1
+  - tbb=2021.13.0=hb60516a_2
   - tblib=3.1.0=pyhd8ed1ab_0
   - terminado=0.18.1=pyh0d859eb_0
   - threadpoolctl=3.6.0=pyhecae5ae_0
@@ -305,11 +304,11 @@ dependencies:
   - zstandard=0.23.0=py310ha75aee5_2
   - zstd=1.5.7=hb8e6e7a_2
   - pip:
-      - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@020de8616b4767a596a4d0f49bce53c8d0c9da5b
-      - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@d567cc98901ecfa360ff2e93f8a6334a1bed24bc
-      - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@01a7068fdab7fba8695ad371c9fd9164760a09df
-      - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@02fbd85bf7d54b8f4336f1f0094c1c3e27714e81
-      - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@9ed6091534d638171957a17324e1a1e8f067b434
+    - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@1dbe97d441d65962a94e071b5c1c27d9facd2050
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@41271883c83f9ad1c9f7b662335dd1d54f880547
+    - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@2e1d9b31ba74e900b7f41f903b73ec2b4e4217b4
+    - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@02fbd85bf7d54b8f4336f1f0094c1c3e27714e81
+    - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@9ed6091534d638171957a17324e1a1e8f067b434
 
 variables:
   KMP_WARNINGS: 0

environments/py-3.10-linux-64.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: 7b2bb2835665234d0ef442f0e4a4c9717b61f9a50ae298c50cf9cae2e9369ece
+# input_hash: aa70c6c517bbe8472b7de3ce4e8d391ca7e1d86e6bfe0e2a4e53e756c6e8388b
 
 channels:
   - conda-forge
@@ -15,10 +15,10 @@ dependencies:
   - brotli-python=1.1.0=py310hf71b8c6_3
   - bzip2=1.0.8=h4bc722e_7
   - c-ares=1.34.5=hb9d3cd8_0
-  - ca-certificates=2025.7.14=hbd8a1cb_0
+  - ca-certificates=2025.8.3=hbd8a1cb_0
   - cached-property=1.5.2=hd8ed1ab_1
   - cached_property=1.5.2=pyha770c72_1
-  - certifi=2025.7.14=pyhd8ed1ab_0
+  - certifi=2025.8.3=pyhd8ed1ab_0
   - cffi=1.17.1=py310h8deb56e_0
   - click=8.2.1=pyh707e725_0
   - cloudpickle=3.1.1=pyhd8ed1ab_0
@@ -39,7 +39,6 @@ dependencies:
   - hdf5=1.14.6=nompi_h6e4c0c1_103
   - hpack=4.1.0=pyhd8ed1ab_0
   - hyperframe=6.1.0=pyhd8ed1ab_0
-  - icu=75.1=he02047a_0
   - importlib-metadata=8.7.0=pyhe01879c_1
   - jinja2=3.1.6=pyhd8ed1ab_0
   - joblib=1.5.1=pyhd8ed1ab_0
@@ -50,11 +49,11 @@ dependencies:
   - ld_impl_linux-64=2.44=h1423503_1
   - lerc=4.0.0=h0aef613_1
   - libaec=1.1.4=h3f801dc_0
-  - libblas=3.9.0=32_hfdb39a5_mkl
+  - libblas=3.9.0=33_hfdb39a5_mkl
   - libbrotlicommon=1.1.0=hb9d3cd8_3
   - libbrotlidec=1.1.0=hb9d3cd8_3
   - libbrotlienc=1.1.0=hb9d3cd8_3
-  - libcblas=3.9.0=32_h372d94f_mkl
+  - libcblas=3.9.0=33_h372d94f_mkl
   - libcurl=8.14.1=h332b0f4_0
   - libdeflate=1.24=h86f0d12_0
   - libdlf=0.3.0=pyhd8ed1ab_1
@@ -64,51 +63,51 @@ dependencies:
   - libffi=3.4.6=h2dba641_1
   - libfreetype=2.13.3=ha770c72_1
   - libfreetype6=2.13.3=h48d6fc4_1
-  - libgcc=15.1.0=h767d61c_3
-  - libgcc-ng=15.1.0=h69a702a_3
-  - libgfortran=15.1.0=h69a702a_3
-  - libgfortran5=15.1.0=hcea5267_3
-  - libhwloc=2.11.2=default_h3d81e11_1002
+  - libgcc=15.1.0=h767d61c_4
+  - libgcc-ng=15.1.0=h69a702a_4
+  - libgfortran=15.1.0=h69a702a_4
+  - libgfortran5=15.1.0=hcea5267_4
+  - libhwloc=2.12.1=default_h3d81e11_1000
   - libiconv=1.18=h4ce23a2_1
   - libjpeg-turbo=3.1.0=hb9d3cd8_0
-  - liblapack=3.9.0=32_hc41d3b0_mkl
+  - liblapack=3.9.0=33_hc41d3b0_mkl
   - liblzma=5.8.1=hb9d3cd8_2
   - libnghttp2=1.64.0=h161d5f1_0
   - libnsl=2.0.1=hb9d3cd8_1
   - libpng=1.6.50=h421ea60_1
   - libscotch=7.0.6=hea33c07_1
   - libspatialindex=2.0.0=he02047a_0
-  - libsqlite=3.50.3=hee844dc_1
+  - libsqlite=3.50.4=h0c1763c_0
   - libssh2=1.11.1=hcf80075_0
-  - libstdcxx=15.1.0=h8f9b012_3
-  - libstdcxx-ng=15.1.0=h4852527_3
+  - libstdcxx=15.1.0=h8f9b012_4
+  - libstdcxx-ng=15.1.0=h4852527_4
   - libtiff=4.7.0=hf01ce69_5
   - libuuid=2.38.1=h0b41bf4_0
   - libwebp-base=1.6.0=hd42ef1d_0
   - libxcb=1.17.0=h8a09558_0
   - libxcrypt=4.4.36=hd590300_1
-  - libxml2=2.13.8=h4bc477f_0
+  - libxml2=2.13.8=h2cb61b6_1
   - libzlib=1.3.1=hb9d3cd8_2
-  - llvm-openmp=20.1.8=h4922eb0_0
+  - llvm-openmp=20.1.8=h4922eb0_1
   - locket=1.0.0=pyhd8ed1ab_0
   - markupsafe=3.0.2=py310h89163eb_1
   - matplotlib-base=3.8.4=py310hef631a5_2
   - metis=5.1.0=hd0bcaf9_1007
-  - mkl=2024.2.2=ha770c72_16
+  - mkl=2024.2.2=ha770c72_17
   - msgpack-python=1.1.1=py310h3788b33_0
   - mumps-include=5.7.3=h82cca05_10
   - mumps-seq=5.7.3=h06cbf8f_10
   - munkres=1.1.4=pyhd8ed1ab_1
   - ncurses=6.5=h2d0b736_3
   - numcodecs=0.13.1=py310h5eaa309_0
   - numpy=1.26.4=py310hb13e2d6_0
-  - openjpeg=2.5.3=h5fbd93e_0
-  - openssl=3.5.1=h7b32b05_0
+  - openjpeg=2.5.3=h55fea9a_1
+  - openssl=3.5.2=h26f9b46_0
   - packaging=25.0=pyh29332c3_1
   - pandas=2.3.1=py310h0158d43_0
   - partd=1.4.2=pyhd8ed1ab_0
   - pillow=10.3.0=py310hebfe307_1
-  - pip=25.1.1=pyh8b19718_0
+  - pip=25.2=pyh8b19718_0
   - psutil=7.0.0=py310ha75aee5_0
   - pthread-stubs=0.4=hb9d3cd8_1002
   - pycparser=2.22=pyh29332c3_1
@@ -127,12 +126,12 @@ dependencies:
   - pyyaml=6.0.2=py310h89163eb_2
   - readline=8.2=h8c095d6_2
   - rtree=1.2.0=py310haf1e407_1
-  - scikit-learn=1.5.2=py310h27f47ee_1
+  - scikit-learn=1.6.1=py310h27f47ee_0
   - scipy=1.14.1=py310hfcf56fc_2
   - setuptools=80.9.0=pyhff2d567_0
   - six=1.17.0=pyhe01879c_1
   - sortedcontainers=2.4.0=pyhd8ed1ab_1
-  - tbb=2021.13.0=hceb3a55_1
+  - tbb=2021.13.0=hb60516a_2
   - tblib=3.1.0=pyhd8ed1ab_0
   - threadpoolctl=3.6.0=pyhecae5ae_0
   - tk=8.6.13=noxft_hd72426e_102
@@ -157,11 +156,11 @@ dependencies:
   - zstandard=0.23.0=py310ha75aee5_2
   - zstd=1.5.7=hb8e6e7a_2
   - pip:
-      - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@020de8616b4767a596a4d0f49bce53c8d0c9da5b
-      - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@d567cc98901ecfa360ff2e93f8a6334a1bed24bc
-      - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@01a7068fdab7fba8695ad371c9fd9164760a09df
-      - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@02fbd85bf7d54b8f4336f1f0094c1c3e27714e81
-      - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@9ed6091534d638171957a17324e1a1e8f067b434
+    - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@1dbe97d441d65962a94e071b5c1c27d9facd2050
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@41271883c83f9ad1c9f7b662335dd1d54f880547
+    - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@2e1d9b31ba74e900b7f41f903b73ec2b4e4217b4
+    - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@02fbd85bf7d54b8f4336f1f0094c1c3e27714e81
+    - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@9ed6091534d638171957a17324e1a1e8f067b434
 
 variables:
   KMP_WARNINGS: 0