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47 changes: 47 additions & 0 deletions variation-normalizer-compose.yaml
Original file line number Diff line number Diff line change
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services:
api:
# image: cancervariants/variation-normalizer-api:latest
image: cancervariants/variation-normalizer-api:0.15.0
environment:
SEQREPO_ROOT_DIR: /usr/local/share/seqrepo/2024-12-20
AWS_ACCESS_KEY_ID: 'DUMMYIDEXAMPLE'
AWS_SECRET_ACCESS_KEY: 'DUMMYEXAMPLEKEY'
AWS_DEFAULT_REGION: 'us-east-2'
GENE_NORM_DB_URL: http://gene-dynamodb-local:8000
UTA_DB_URL: postgresql://anonymous@uta:5432/uta/uta_20241220

ports:
- "8001:80"

depends_on:
uta:
condition: service_started
gene-dynamodb-local:
condition: service_started

volumes:
- uta_vol:/var/lib/postgresql/data
# - /usr/local/share/seqrepo:/usr/local/share/seqrepo
- /Users/kferrite/dev/data/seqrepo:/usr/local/share/seqrepo:ro

uta:
# Test:
# psql -XAt postgres://anonymous@localhost/uta -c 'select count(*) from uta_20241220.transcript'
# 329090
image: biocommons/uta:uta_20241220
environment:
- POSTGRES_PASSWORD=some-password-that-you-make-up
volumes:
- uta_vol:/var/lib/postgresql/data
- ./uta-setup.sql:/docker-entrypoint-initdb.d/uta-setup.sql
ports:
- 5434:5432

gene-dynamodb-local:
image: cancervariants/gene-normalizer-ddb:latest
ports:
- "8000:8000"

volumes:
uta_vol:
external: true