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2 changes: 1 addition & 1 deletion clara-bridge/submission/EXECUTIVE-SUMMARY.md
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Expand Up @@ -194,7 +194,7 @@ Trinity CLARA implements four DARPA-specified neuro-symbolic composition pattern

### References

1. Coq Development - t27/codebase/proofs/ (84 theorems verifying Trinity kernel)
1. Coq Development - t27/coq + t27/proofs (28 .v files, 218 statements = 122 Theorem + 96 Lemma, 162 Qed, 32 Admitted, 11 Abort on 2026-05-12 audit). The folkloric "84 theorems" count is retired.
2. AR Specifications - specs/ar/*.t27 (7 specifications, 93 tests each with bounded reasoning)
3. VSA Performance - gen/verilog/vsa/*.v (hardware synthesis files with resource utilization)
4. ML Specifications - specs/nn/*.t27 (neural network layers, attention mechanisms, RL)
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12 changes: 11 additions & 1 deletion docs/NOW.md
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@@ -1,10 +1,20 @@
# Current Work — Trinity t27

**Last updated:** 2026-05-08
**Last updated:** 2026-05-12
**Note:** GF16 4×4 matmul validated on FPGA @ 323 MHz, 40350 LUTs, 64 DSP48E1, 0 latches. **TinyTapeout TTSKY26a submitted** — `gHashTag/tt-trinity-gf16`, CI running. 41.2 GOPS @ 323 MHz | 12.8 GOPS @ 100 MHz.

---

## R5-PASS-4 Honest Audit (PR #594, Issue #595)

- Retired the folkloric "84 theorems" claim across `research/` (actual corpus: 28 .v files, 218 statements, 162 Qed, 32 Admitted, 11 Abort — audit 2026-05-12)
- Rewrote `docs/ZENODO.md` as a registry pointer aligned with [trios `zenodo-registry.md`](https://github.com/gHashTag/trios/blob/main/docs/infrastructure/zenodo-registry.md)
- Bibliography honesty: commented out fake `zenodo.12345` placeholder, corrected `zenodo.19271888` mislabel (actually Koide-formula paper), and `zenodo.19377394` mislabel (actually Latin-American employment dataset) in `research/trinity-pellis-paper/G2_*`
- Sibling PRs (R5-PASS-4): gHashTag/trinity#592 (merged), gHashTag/trinity-fpga#43 (merged)
- Sibling PRs (R5-PASS-5): gHashTag/trinity#593, gHashTag/trinity-fpga#44 (new arXiv/ORCID class)
- Throne: [trios#264](https://github.com/gHashTag/trios/issues/264)


## Active Work

**GF16 Hardware Accelerator — FPGA**
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77 changes: 57 additions & 20 deletions docs/ZENODO.md
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@@ -1,27 +1,64 @@
# Zenodo DOI Registry — Trinity / t27

## Collection
> **Audit 2026-05-12** — registry rewritten under R5-honest deep sweep PASS-4.
> All March 2026 DOIs (`19224xxx`) were marked SUPERSEDED on Zenodo and replaced
> by the May 2026 canonical set (`19227865`–`19227879`). Cite only the canonical
> set in new work.

| DOI | Title | Date | Type |
|-----|-------|------|------|
| [10.5281/zenodo.19224105](https://doi.org/10.5281/zenodo.19224105) | Trinity Defensive Publications — Complete Collection (69 Discoveries) | 2026-03-25 | Journal article |
| [10.5281/zenodo.18939351](https://doi.org/10.5281/zenodo.18939351) | gHashTag/trinity — Trinity v2.0.3 FPGA Autoregressive Ternary LLM | 2026-03-11 | Software |
## Honest framing

## Individual Bundles (B001–B007)
These DOIs are **software description stubs** on Zenodo, NOT peer-reviewed
papers. The mathematical anchor `φ² + φ⁻² = 3` is an algebraic identity from
`φ = (1+√5)/2`. Its Coq witness lives in this very repository
([`gHashTag/t27/coq` + `proofs`](https://github.com/gHashTag/t27)) — **28 .v
files, 218 statements (122 Theorem + 96 Lemma), 162 Qed, 32 Admitted, 11 Abort,
audited 2026-05-12**.

For "always-latest of B007" use **concept DOI** `10.5281/zenodo.19227876` (it
resolves to the current B007 version regardless of revisions).

## Canonical collection (curated, 2026-05-12)

| DOI | Title | Type |
|-----|-------|------|
| [10.5281/zenodo.19227879](https://doi.org/10.5281/zenodo.19227879) | Trinity — Defensive Publications Collection (parent record) | Software description |
| [10.5281/zenodo.18950696](https://doi.org/10.5281/zenodo.18950696) | gHashTag/trinity v2.0.3 — FPGA Autoregressive Ternary LLM | Software release |

## Individual bundles B001–B007 (canonical)

| DOI | Bundle | Description |
|-----|--------|-------------|
| [10.5281/zenodo.19224114](https://doi.org/10.5281/zenodo.19224114) | B001 | Ternary Neural Networks — HSLM 1.95M, T-JEPA, Cosine LR |
| [10.5281/zenodo.19224115](https://doi.org/10.5281/zenodo.19224115) | B002 | Zero-DSP FPGA — Ternary MAC, DSP48E1, CORDIC, OpenXC7 |
| [10.5281/zenodo.19224116](https://doi.org/10.5281/zenodo.19224116) | B003 | TRI-27 ISA — 36 opcodes, 27 registers, Coptic Alphabet |
| [10.5281/zenodo.19224118](https://doi.org/10.5281/zenodo.19224118) | B004 | Queen Lotus Cycle — 6-phase self-improvement, SEVO |
| [10.5281/zenodo.19224119](https://doi.org/10.5281/zenodo.19224119) | B005 | Tri Language — Linear Types, Algebraic Effects |
| [10.5281/zenodo.19224120](https://doi.org/10.5281/zenodo.19224120) | B006 | Sacred Formats — GF16/TF3, phi-Distance |
| [10.5281/zenodo.19224121](https://doi.org/10.5281/zenodo.19224121) | B007 | VSA Operations — bind/unbind/bundle, Cosine Similarity |

## Specific Version DOIs

| DOI | Version | Description |
|-----|---------|-------------|
| [10.5281/zenodo.19224139](https://doi.org/10.5281/zenodo.19224139) | v2 (latest) | Complete Collection v2 |
| [10.5281/zenodo.18950696](https://doi.org/10.5281/zenodo.18950696) | v2.0.3 | Trinity software release |
| [10.5281/zenodo.19227865](https://doi.org/10.5281/zenodo.19227865) | B001 | HSLM-1.95M ternary LM (training-recipe stub) |
| [10.5281/zenodo.19227867](https://doi.org/10.5281/zenodo.19227867) | B002 | Zero-DSP FPGA — ternary inference architecture sketch |
| [10.5281/zenodo.19227869](https://doi.org/10.5281/zenodo.19227869) | B003 | TRI-27 — ternary ISA with Coptic encoding |
| [10.5281/zenodo.19227871](https://doi.org/10.5281/zenodo.19227871) | B004 | Queen Lotus Cycle — autonomous orchestration |
| [10.5281/zenodo.19227873](https://doi.org/10.5281/zenodo.19227873) | B005 | Tri Language — linear types, algebraic effects |
| [10.5281/zenodo.19227875](https://doi.org/10.5281/zenodo.19227875) | B006 | GF16/TF3 — phi-based arithmetic |
| [10.5281/zenodo.19227877](https://doi.org/10.5281/zenodo.19227877) | B007 | VSA operations — bind/unbind/bundle |

## Retired (superseded on Zenodo 2026-05-12)

The following DOIs now have `[SUPERSEDED — see 10.5281/zenodo.<canonical>]`
title prefixes and `relation: isObsoletedBy` pointing to the canonical set
above. Do not cite them in new work.

| Retired DOI | Was | Canonical replacement |
|-------------|-----|----------------------|
| [10.5281/zenodo.19224105](https://doi.org/10.5281/zenodo.19224105) | Complete Collection (March-2026) | `19227879` |
| [10.5281/zenodo.19224139](https://doi.org/10.5281/zenodo.19224139) | Complete Collection v2 | `19227879` |
| [10.5281/zenodo.19224114](https://doi.org/10.5281/zenodo.19224114) | B001 (March) | `19227865` |
| [10.5281/zenodo.19224115](https://doi.org/10.5281/zenodo.19224115) | B002 (March) | `19227867` |
| [10.5281/zenodo.19224116](https://doi.org/10.5281/zenodo.19224116) | B003 (March) | `19227869` |
| [10.5281/zenodo.19224118](https://doi.org/10.5281/zenodo.19224118) | B004 (March) | `19227871` |
| [10.5281/zenodo.19224119](https://doi.org/10.5281/zenodo.19224119) | B005 (March) | `19227873` |
| [10.5281/zenodo.19224120](https://doi.org/10.5281/zenodo.19224120) | B006 (March) | `19227875` |
| [10.5281/zenodo.19224121](https://doi.org/10.5281/zenodo.19224121) | B007 (March) | `19227877` |
| [10.5281/zenodo.18939351](https://doi.org/10.5281/zenodo.18939351) | Trinity v2.0.3 FPGA LLM (older record) | use `18950696` for v2.0.3 |

## Cross-sibling registry

The full Trinity hive Zenodo registry (with related identifiers, communities,
and supersession history for all 12 canonical records + 28 retired versions)
lives in [`gHashTag/trios/docs/infrastructure/zenodo-registry.md`](https://github.com/gHashTag/trios/blob/main/docs/infrastructure/zenodo-registry.md).

— end of registry —
20 changes: 10 additions & 10 deletions docs/nona-03-manifest/RESEARCH_CLAIMS.md
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Expand Up @@ -88,15 +88,15 @@ The paper states explicitly that many relations are **empirical approximations**

These Zenodo records describe **architectures and artifacts**, not theorems. Claims below should be tightened as independent benchmarks and papers appear.

**Related DOIs:** [10.5281/zenodo.18939352](https://doi.org/10.5281/zenodo.18939352) (FPGA autoregressive ternary LLM), [10.5281/zenodo.19020211](https://doi.org/10.5281/zenodo.19020211) (Ouroboros), [10.5281/zenodo.19020213](https://doi.org/10.5281/zenodo.19020213) (VSA + SIMD), [10.5281/zenodo.19020215](https://doi.org/10.5281/zenodo.19020215) (phi-RoPE), [10.5281/zenodo.19020217](https://doi.org/10.5281/zenodo.19020217) (sparse ternary matmul), [10.5281/zenodo.19227877](https://doi.org/10.5281/zenodo.19227877) (VSA ops); concept [10.5281/zenodo.18947017](https://doi.org/10.5281/zenodo.18947017).
**Related DOIs:** [10.5281/zenodo.18939352](https://doi.org/10.5281/zenodo.18939352) (FPGA autoregressive ternary LLM), [10.5281/zenodo.19020270](https://doi.org/10.5281/zenodo.19020270) (Ouroboros), [10.5281/zenodo.19020275](https://doi.org/10.5281/zenodo.19020275) (VSA + SIMD), [10.5281/zenodo.19020280](https://doi.org/10.5281/zenodo.19020280) (phi-RoPE), [10.5281/zenodo.19020282](https://doi.org/10.5281/zenodo.19020282) (sparse ternary matmul), [10.5281/zenodo.19227877](https://doi.org/10.5281/zenodo.19227877) (VSA ops); concept [10.5281/zenodo.18947017](https://doi.org/10.5281/zenodo.18947017).

| ID | Claim | Domain | Status | Rationale | Artifacts |
|----|-------|--------|--------|-----------|-----------|
| C-ternary-001 | FPGA autoregressive ternary LLM runs inference in balanced-ternary arithmetic | HW / ML | `EMPIRICAL_FIT` | Zenodo describes design/code; independent replication + benchmarks needed. | 10.5281/zenodo.18939352 |
| C-ternary-002 | Self-Evolving Ouroboros demonstrates a self-hosting / self-evolving cycle | Systems | `CONJECTURAL` | Need formal criteria and reproducible experiment logs. | 10.5281/zenodo.19020211 |
| C-ternary-003 | VSA balanced ternary + SIMD gives stable high-dimensional VSA ops | VSA / numerics | `EMPIRICAL_FIT` | Zenodo description; needs stability tests vs binary VSA baselines. | 10.5281/zenodo.19020213, 10.5281/zenodo.19227877 |
| C-ternary-004 | phi-RoPE improves quality/stability vs standard RoPE on binary models | ML / attention | `CONJECTURAL` | Need public perplexity / stability / spectral comparisons. | 10.5281/zenodo.19020215 |
| C-ternary-005 | Sparse ternary matmul wins FLOPs/W and/or latency on FPGA vs dense binary matmul | HW | `CONJECTURAL` | Need published measurement methodology. | 10.5281/zenodo.19020217 |
| C-ternary-002 | Self-Evolving Ouroboros demonstrates a self-hosting / self-evolving cycle | Systems | `CONJECTURAL` | Need formal criteria and reproducible experiment logs. | 10.5281/zenodo.19020270 |
| C-ternary-003 | VSA balanced ternary + SIMD gives stable high-dimensional VSA ops | VSA / numerics | `EMPIRICAL_FIT` | Zenodo description; needs stability tests vs binary VSA baselines. | 10.5281/zenodo.19020275, 10.5281/zenodo.19227877 |
| C-ternary-004 | phi-RoPE improves quality/stability vs standard RoPE on binary models | ML / attention | `CONJECTURAL` | Need public perplexity / stability / spectral comparisons. | 10.5281/zenodo.19020280 |
| C-ternary-005 | Sparse ternary matmul wins FLOPs/W and/or latency on FPGA vs dense binary matmul | HW | `CONJECTURAL` | Need published measurement methodology. | 10.5281/zenodo.19020282 |

---

Expand All @@ -105,7 +105,7 @@ These Zenodo records describe **architectures and artifacts**, not theorems. Cla
| ID | Claim | Domain | Status | Rationale | Artifacts |
|----|-------|--------|--------|-----------|-----------|
| C-meta-001 | Trinity / t27 is a spec-first ternary stack; Zig/C/Verilog backends are generated from `.t27` | PL / compilers | `EMPIRICAL_FIT` | Repo layout + CI (gen headers, conformance) demonstrate discipline; full `docs/nona-02-organism/LANGUAGE_SPEC.md` + backend contracts still incomplete. | This repo; `docs/nona-02-organism/LANGUAGE_SPEC.md`, `docs/BACKEND_CONTRACT.md`. |
| C-meta-002 | Trinity / t27 is self-hosting / self-evolving | Systems | `CONJECTURAL` | Define terms precisely + reproducible pipeline; partial story in rings + Ouroboros Zenodo. | 10.5281/zenodo.19020211; `CANON.md`, `docs/nona-01-foundation/SEED-RINGS.md`. |
| C-meta-002 | Trinity / t27 is self-hosting / self-evolving | Systems | `CONJECTURAL` | Define terms precisely + reproducible pipeline; partial story in rings + Ouroboros Zenodo. | 10.5281/zenodo.19020270; `CANON.md`, `docs/nona-01-foundation/SEED-RINGS.md`. |

---

Expand Down Expand Up @@ -134,10 +134,10 @@ These Zenodo records describe **architectures and artifacts**, not theorems. Cla
| [10.5281/zenodo.18947017](https://doi.org/10.5281/zenodo.18947017) | Concept DOI (all versions) | 2026-03-10 |
| [10.5281/zenodo.18950696](https://doi.org/10.5281/zenodo.18950696) | Latest Trinity Framework version | 2026-03-10 |
| [10.5281/zenodo.18939352](https://doi.org/10.5281/zenodo.18939352) | FPGA Autoregressive Ternary LLM | 2026-03-10 |
| [10.5281/zenodo.19020211](https://doi.org/10.5281/zenodo.19020211) | Self-Evolving Ouroboros | 2026-03-14 |
| [10.5281/zenodo.19020213](https://doi.org/10.5281/zenodo.19020213) | VSA Balanced Ternary + SIMD | 2026-03-14 |
| [10.5281/zenodo.19020215](https://doi.org/10.5281/zenodo.19020215) | phi-RoPE Attention | 2026-03-14 |
| [10.5281/zenodo.19020217](https://doi.org/10.5281/zenodo.19020217) | Sparse Ternary MatMul | 2026-03-14 |
| [10.5281/zenodo.19020270](https://doi.org/10.5281/zenodo.19020270) | Self-Evolving Ouroboros | 2026-03-14 |
| [10.5281/zenodo.19020275](https://doi.org/10.5281/zenodo.19020275) | VSA Balanced Ternary + SIMD | 2026-03-14 |
| [10.5281/zenodo.19020280](https://doi.org/10.5281/zenodo.19020280) | phi-RoPE Attention | 2026-03-14 |
| [10.5281/zenodo.19020282](https://doi.org/10.5281/zenodo.19020282) | Sparse Ternary MatMul | 2026-03-14 |
| [10.5281/zenodo.19227877](https://doi.org/10.5281/zenodo.19227877) | VSA Operations for Ternary Computing | — |

---
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Expand Up @@ -374,7 +374,7 @@ This work emerged from discussions within the Trinity S³AI research group. We a

**[chimera2026]** S. Pellis, *CKM Wolfenstein Parameters via Golden Ratio Polynomials*, preprint, 2026.

**[olsen2026]** S. Olsen, *Historical Context of φ in Physics: from Pythagoras to Bohm*, Zenodo, DOI: 10.5281/zenodo.19377394, 2026.
**[olsen2026]** S. Olsen, *Historical Context of φ in Physics: from Pythagoras to Bohm*, contribution to this paper (2026). [R5-honest audit 2026-05-12: the DOI 10.5281/zenodo.19377394 previously cited here resolves to an unrelated Latin-American employment dataset, not to Olsen's work. Restated as personal contribution; replace with real Olsen Zenodo DOI before publication.]

**[PDG2024]** Particle Data Group (S. Navas et al.), *Review of Particle Physics*, Phys. Rev. D **110**, 030001 (2024).

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Original file line number Diff line number Diff line change
Expand Up @@ -513,8 +513,11 @@ \section*{Acknowledgments}
\bibitem{olsen2026}
S.~Olsen,
\textit{Historical Context of $\varphi$ in Physics: from Pythagoras to Bohm},
\textit{Zenodo},
\href{https://doi.org/10.5281/zenodo.19377394}{DOI:~10.5281/zenodo.19377394}, 2026.
% R5-honest audit 2026-05-12: the DOI 10.5281/zenodo.19377394 previously
% cited here does NOT resolve to an Olsen paper on phi. It resolves to an
% unrelated Latin-American employment dataset. Aligned with V0.9 of this
% paper, the citation is restated as a personal contribution.
contribution to this paper (2026).

\bibitem{PDG2024}
Particle Data Group (S.~Navas et al.),
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Original file line number Diff line number Diff line change
Expand Up @@ -680,8 +680,13 @@ \section*{Acknowledgments}
\bibitem{olsen2026}
S.~Olsen,
\textit{Historical Context of $\varphi$ in Physics: from Pythagoras to Bohm},
Zenodo,
\href{https://doi.org/10.5281/zenodo.19377394}{DOI:~10.5281/zenodo.19377394}, 2026.
% R5-honest audit 2026-05-12: the DOI 10.5281/zenodo.19377394 previously
% cited here does NOT resolve to an Olsen paper on phi. It resolves to
% ``Visual Summary (Français): Empleo en América latina: Base de Données
% par Pays (2000-2020)'' — an unrelated Latin-American employment dataset.
% Aligned with V0.9 of this paper, the citation is restated as a personal
% contribution; replace with a real Olsen Zenodo DOI before publication.
contribution to this paper (2026).

\bibitem{PDG2024}
Particle Data Group (S.~Navas et al.),
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16 changes: 13 additions & 3 deletions research/trinity-pellis-paper/G2_TRINITY_V1.0_FRAGRANCE.tex
Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,11 @@
$^3$ Wisdom Traditions Center, LLC, 1802 SW 28th St., Ocala, Florida 34471 USA}\\[2pt]
{\small \texttt{admin@t27.ai} \quad \texttt{sterpellis@gmail.com}}
\date{April 2026}
\doi{https://doi.org/10.5281/zenodo.12345}
% DOI placeholder removed by R5-honest audit 2026-05-12. The literal
% `10.5281/zenodo.12345` resolved to an unrelated paper on Roman history
% (Clientelas, relaciones internacionales e imperialismo en la expansión
% de la República romana). Replace with a real Zenodo DOI before publication.
% \doi{https://doi.org/10.5281/zenodo.XXXXXXXX}

\begin{document}
\maketitle
Expand Down Expand Up @@ -1148,8 +1152,14 @@ \section*{Acknowledgments}
PhilArchive (2026).

\bibitem{zenodo19271888}
Zenodo inverse participation ratio reference,
Zenodo DOI:~10.5281/zenodo.19271888 (2026).
% R5-honest audit 2026-05-12: DOI 10.5281/zenodo.19271888 resolves to
% McKoy, C. (2026) ``V2: The Cogito of Fermion Masses: Two Independent
% Mathematical Framings of the Koide Formula ... and Its Identification
% with the AdS/CFT Correspondence''. The original `inverse participation
% ratio reference' label was incorrect; the cited record is about Koide.
McKoy, C.
\textit{V2: The Cogito of Fermion Masses: Two Independent Mathematical Framings of the Koide Formula, a New Geometric Interpretation, and Its Identification with the AdS/CFT Correspondence},
Zenodo DOI:~\href{https://doi.org/10.5281/zenodo.19271888}{10.5281/zenodo.19271888} (2026).

\bibitem{kagome2026}
Kagome lattice UCD result (2026).
Expand Down
6 changes: 3 additions & 3 deletions research/trinity-pellis-paper/trinity_sacred_formula_v2.tex
Original file line number Diff line number Diff line change
Expand Up @@ -89,7 +89,7 @@
spanning quantum gravity, neural dynamics, and cosmology.
The central named constant is $\aph = \ph^{-3}/2 = (\sqrt{5}-2)/2\approx0.118034$,
coinciding with $\alpha_s(m_Z)=0.1180\pm0.0009$ within $0.03\sigma$.
Machine-verified Coq proof base: \textbf{84 theorems}, 13 compiled \texttt{.v}~files
Machine-verified Coq proof base: \textbf{audited 2026-05-12: 28 \texttt{.v} files, 218 statements (122 Theorem + 96 Lemma), 162 Qed, 32 Admitted, 11 Abort}. The earlier folkloric ``84 theorems'' count is superseded by this audit
(Rocq~9.1.1 + \texttt{coq-interval}$\ge$4.8.0, 0~compilation errors).%
\footnote{Repository: \url{https://github.com/gHashTag/t27}.
Monte Carlo significance: $p=1.47\times10^{-53}$ (Poisson, $\mu_0\approx0.4$).
Expand Down Expand Up @@ -484,7 +484,7 @@ \section*{5.\quad Chimera v1.0: ML Search + Coq Verification}
\end{tikzpicture}
\caption{L1--L7 derivation hierarchy. Each level adds mathematical structure;
formulas at higher levels derive from lower levels via composition.
Total: 84 theorems across 7 levels.}
Total: audited 2026-05-12 as 218 statements (162 Qed, 32 Admitted, 11 Abort); the earlier ``84 theorems / 7 levels'' shorthand is retired.}
\label{fig:levels}
\end{figure}

Expand Down Expand Up @@ -764,7 +764,7 @@ \section*{12.\quad Machine-Verified Proof Base}
The ML search engine (Python, 2400+ lines) generates Trinity monomial
candidates, which are then certified in Coq. This AR+ML composition
demonstrates the CLARA technical objective of verifiable reasoning
at scale: 84 theorems, L1-L7 hierarchy, depth $\le$ 7 levels.
at scale: 218 audited statements (2026-05-12), L1-L7 hierarchy, depth $\le$ 7 levels.

% ============================================================
\section*{13.\quad Conclusion}
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