chore: bump python floor to 3.14, modernize CI/build, ruff FURB sweep#118
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FIrgolitsch wants to merge 2 commits intopr-o-galvo-fixfrom
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chore: bump python floor to 3.14, modernize CI/build, ruff FURB sweep#118FIrgolitsch wants to merge 2 commits intopr-o-galvo-fixfrom
FIrgolitsch wants to merge 2 commits intopr-o-galvo-fixfrom
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- pyproject.toml: requires-python >=3.14 - Drop `from __future__ import annotations` across the codebase (no-op on 3.14) - linumpy.config.threads: adopt os.process_cpu_count() over os.cpu_count() - Update CI matrices (.github/workflows/python-app.yml, publish.yaml) to py3.14 - Bump .readthedocs.yaml + Dockerfile base image to py3.14; drop unused .python-version copy - Remove .pep8speaks.yml (deprecated service); add docker-publish.yml for GHCR - Misc workflow cleanup: drop redundant python-version pins, fix nextflow-ci checkout - ruff: enable FURB rule set + apply modernization sweep (pathlib, dict.fromkeys, list comprehensions, etc.) - README + docs/NEXTFLOW_WORKFLOWS: update python version refs
This was referenced May 1, 2026
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PR — Python 3.14 migration + build/CI modernization + ruff FURB sweep
Bumps the project to Python 3.14 as the new floor and modernizes the build, CI, and codebase to take advantage of it.
Runtime
pyproject.toml:requires-python = ">=3.14".from __future__ import annotationsacross the codebase (no-op on 3.14, removes ~70 stale imports).linumpy.config.threads: adoptos.process_cpu_count()overos.cpu_count()(respects cgroup/affinity limits).CI / build
.github/workflows/python-app.yml,publish.yaml: matrices bumped to 3.14..readthedocs.yaml: Python 3.14.Dockerfile: base image bumped topython:3.14; drop unused.python-versionfromCOPY..pep8speaks.yml(deprecated service)..github/workflows/docker-publish.yml: builds and pushes the image to GHCR on tag.python-versionpins, fixnextflow-cicheckout.Code modernization
FURBrule set + apply the modernization sweep acrosslinumpy/andscripts/(pathlib,dict.fromkeys, list comprehensions,str.removeprefix/suffix, etc.).docs/NEXTFLOW_WORKFLOWS.md: update Python version references.No behavioural changes — pure tooling/version bump + automated style refactors verified by ruff and ty.