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LDSC implementation #91

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04cafb8
LDSC
LArnoldt Oct 30, 2025
0367136
LDSC
LArnoldt Oct 30, 2025
ea91b8c
LDSC implementation
LArnoldt Nov 6, 2025
3613221
Merge branch 'main' into la_ldsc_docs_v2
LArnoldt Nov 7, 2025
c9e9ffa
bugfix
LArnoldt Dec 7, 2025
d2a448d
fix
LArnoldt Dec 12, 2025
b956210
fix
LArnoldt Dec 12, 2025
ddc8917
fix
LArnoldt Dec 12, 2025
0b3828f
LDSC fixes
LArnoldt Dec 28, 2025
693f459
LDSC update
LArnoldt Jan 7, 2026
2bbd080
Testing changes
Ayshan4444 Jan 19, 2026
0c1572b
Updating LDSC implemention + adding a MAGMA converter
Ayshan4444 Jan 26, 2026
c9acea2
Modified conversion
Ayshan4444 Mar 11, 2026
05f3cce
Adding continuous LDSC, Magma gene propery analysis and consolidating…
Ayshan4444 May 26, 2026
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7,306 changes: 7,306 additions & 0 deletions docs/tutorials/cell_level_ldsc_analysis.ipynb
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8,150 changes: 8,150 additions & 0 deletions docs/tutorials/cell_level_ldsc_analysis_updates.ipynb
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@LArnoldt LArnoldt May 28, 2026

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@Ayshan4444 This now has mygene and pybiomart. Could we use pybiomart throughout, since it's used everywhere else in the package, so we don't have two tools doing essentially the same task?

@LArnoldt LArnoldt May 28, 2026

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@Ayshan4444 This notebook does not show off the functionality for the continuous annotations (e.g. make_continuous_annot_from_bimfile), only the non-continuous, no? Could we show this and demonstrate the differences in the notebook?

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279 changes: 0 additions & 279 deletions docs/tutorials/ldsc_duncan_merge_anndatas.ipynb
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