[codex] patch Vite security advisory#1
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Vedasheersh wants to merge 37 commits intotheproteinbot:mainfrom
Draft
[codex] patch Vite security advisory#1Vedasheersh wants to merge 37 commits intotheproteinbot:mainfrom
Vedasheersh wants to merge 37 commits intotheproteinbot:mainfrom
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Harden inference API and add secure backend/deserialization architecture
…paration Replace the 3-pill parameter selector with two top-level modes: - Substrate kinetics (kcat/Km): per-entry multi-substrate inputs with primary marker — primary goes to Km, all joined for kcat - Inhibition (Ki): single inhibitor SMILES input Key changes: - New SubstrateInputs component with radio primary selector - ParameterSelector now shows mode pills + kcat/Km checkboxes - usePrediction supports running multiple predictions in parallel - ResultPanel displays grouped results per parameter - Units render with Unicode superscripts (s⁻¹ instead of s^(-1)) - Header updated with Maranas Group link, field order: sequence first - Sample data for both modes (glucokinase/glucose+ATP, coumaric acid/P11544) Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Stop silently falling back to static/index.html when the Vue dist build is missing — surface a clear 404 instead so deployment issues are visible rather than hidden behind the old page. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Move "Developed in Maranas Group at Penn State" with link to maranasgroup.com into the footer. Keep only Paper and GitHub links in the header. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Add GoatCounter analytics script (privacy-friendly, no cookies) and display visit count in the footer via GoatCounter's public JSON API. Counter gracefully hides if the API is unreachable. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
…trate-ki-separation feat(web): multi-substrate input, Ki separation, and frontend improvements
…tion Add www.catpred.com badge and Web App section highlighting the live prediction tool. Document Vue 3 frontend location and dev/build commands in the Web API section. Update citation from bioRxiv preprint to published Nature Communications reference (2025, vol 16, art 2072). Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Replace placeholder SMILES/sequence with the same human glucokinase (GCK, UniProt P35557) + D-glucose example used on www.catpred.com. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
… section; remove favicon - Fix 4-backtick code block closing to 3 - Fix git clone URL casing (catpred → CatPred) - Add Fine-Tuning and Docker entries to Table of Contents - Add Docker subsection under Local Installation - Remove favicon SVG and its link tag from index.html Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
…trate-ki-separation docs(readme): add web app section and update citation
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Summary
vitefrom^6.3.5to^6.4.2vite 6.4.2picomatchandbrace-expansionWhy
GitHub flagged
catpred/web/frontend/package-lock.jsonforCVE-2026-39363/GHSA-p9ff-h696-f583, which affects Vite6.0.0through6.4.1. This branch moves the frontend to the first patched6.xrelease and clears the remaining frontend audit findings in the lockfile.Impact
Validation
npm auditnpm run build