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bump samtools version to 1.22 #24

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Merged
kiarod merged 1 commit into from
Jun 4, 2025
Merged

bump samtools version to 1.22 #24

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7 changes: 4 additions & 3 deletions CHANGELOG.md
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Expand Up @@ -6,12 +6,13 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

---

## [Unreleased]
## [1.22] 2025-05-30
### Added
- Add gnuplot

---
### Changed
- Update SAMTools version to 1.22

## [1.21] 2024-09-16
### Changed
- Update SAMTools version to 1.21
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2 changes: 1 addition & 1 deletion Dockerfile
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@@ -1,7 +1,7 @@
ARG MINIFORGE_VERSION=22.9.0-2
FROM condaforge/mambaforge:${MINIFORGE_VERSION} AS builder
# Use mamba to install tools and dependencies into /usr/local
ARG SAMTOOLS_VERSION=1.21
ARG SAMTOOLS_VERSION=1.22
RUN mamba create -qy -p /usr/local \
-c conda-forge \
-c bioconda \
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -9,7 +9,7 @@ SAMtools documentation [here](http://www.htslib.org/doc/samtools.html).
# Version
| Tool | Version |
|------|---------|
|SAMtools| 1.21 |
|SAMtools| 1.22 |
|gnuplot| 5.4 patchlevel 10 |

---
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2 changes: 1 addition & 1 deletion metadata.yaml
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Expand Up @@ -5,7 +5,7 @@ maintainers: ['rhughwhite@mednet.ucla.edu']
contributors: ['Rupert Hugh-White', 'Helena Winata', 'Arpi Beshlikyan', 'Jaron Arbet', 'Sorel Fitz-Gibbon', 'Beth Neilsen', 'Kiarod Pashminehazar']
languages: ['Dockerfile']
tools: ['SAMtools', 'gnuplot']
version: ['1.21']
version: ['1.22']
purpose: 'A tool for reading/writing/editing/indexing/viewing SAM/BAM/CRAM format'
references: 'Li H et al. Bioinformatics 25, (2009)'
image_name: 'samtools'
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