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ComparativeGenomicsToolkit / cactus Public

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Update caf to use new paffy Cigar array API#1905

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benedictpaten wants to merge 6 commits intomasterComparativeGenomicsToolkit/cactus:masterfrom

faster_pafsComparativeGenomicsToolkit/cactus:faster_pafsCopy head branch name to clipboard

Conversation Commits6 (6)Checks Files changed

Open

Update caf to use new paffy Cigar array API#1905
benedictpaten wants to merge 6 commits intomasterfrom
faster_pafs

Commits

Commits on Mar 10, 2026

update sonLib and paffy submodules to latest

benedictpaten
and
claude
committed
update caf to use new paffy Cigar array API

benedictpaten
and
claude
committed

Commits on Mar 11, 2026

parallelize paffy chain per target contig to reduce peak memory

benedictpaten
and
claude
committed
update sonLib and paffy submodules to latest

benedictpaten
and
claude
committed
fix paffy split_file to split by query contig (-q), not target

benedictpaten
and
claude
committed
fix comment: split is by query contig, not target

benedictpaten
and
claude
committed

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